Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00953 ATGGCTGAAGTTGTTGAAGAACCTGTCGTAGTTTCAGATCCTTCCCAAGTCGAAGTCAAACTCTTTAACCGCTGGAGCTTCGATGACATTCAGGTTTCTGATGTGTCTCTGAGTGATTACATTGGAGTTTCGGCATCAAAGCACGCCACATATGTTCCACATACTGCTGGTAGATATTCTATGAAAAGGTTCAGGAAAGCGCAGTGTCCCATTGTTGAGAGGCTTACAAACACTCTCATGATGCACGGGAGGAACAACGGAAAAAAGCTTAAGGCGGTTGGAATCATTAAGCACGCCATGGAGATTATTCATTTGCTTAGTGATCAGAACCCGATCCAGGTTATTGTTGATGCTGTTATCAACAGTGGTCCTCGTGAAGATGCGACTCGTATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCCGTGGATATCTCACCCCTTCGTCGTGTTAATCAAGCCATTTATCTTCTAATTACTGGAGCACGTGAAGCTGCTTTCAGAAATATTAAGACAATTGCTGAGTGTCTGGCTGATGAACTTATTAATGCAGCAAAAGGTTCATCTAACAGTTATGCGATAAAGAAAAAAGATGAAATTGAAAGAGTAGCCAAGGCAAATCGTTAA 624 0.4263 MAEVVEEPVVVSDPSQVEVKLFNRWSFDDIQVSDVSLSDYIGVSASKHATYVPHTAGRYSMKRFRKAQCPIVERLTNTLMMHGRNNGKKLKAVGIIKHAMEIIHLLSDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLITGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00953 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa2g00953 207 PANTHER RIBOSOMAL PROTEIN S7 17 207 IPR000235 GO:0006412
Vifa2g00953 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Vifa2g00953 207 FunFam 40S ribosomal protein S5 3 207 - -
Vifa2g00953 207 Gene3D Ribosomal protein S7 domain 3 207 IPR036823 -
Vifa2g00953 207 NCBIfam 30S ribosomal protein S7 18 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vifa2g00953 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vifa2g00953 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 207 IPR000235 GO:0006412
Vifa2g00953 207 Pfam Ribosomal protein S7p/S5e 63 207 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00953 Vifa-Chr2 255203005 255204578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00953 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.000 4.10e-130 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00953 K02989 - gmx:100305898 360.918