Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00949 ATGAATAAGATTTTGGTTGGGTATCATCGTTTCTTCGTCTTCTTGCTTCTAACTAGGGTTTCCTTAACCTCATCACTCCCACACACTCATAATGTTCATGTAGATTCAGACACTACAAGAATTCTGAATCAAGAGCAGGGGGATGTTCATCGAATACATTGCTCTAGAGAAAGAAGTAGAATAGCTTGGAAGATCATTCAAGAGTATTTGACGCCAGTTGTAGAGAAAGAAAAATATAATATCTCAAGAAAGTGCAGGCTTCACCCTGAAAATGATATATACAGAGATCAGGAACAGCATAAATCTCATATAGATATAAATGAGTGGCAGTGTGGATACTGTAAGAAAACTTTCTACGAAGAGAAGCATCTTGATCAGCATTTTGACAACAGACACTCCAATTTACTTAACTTGAATGAAAGCCAGTGCTTAGCAGATGTATGTGGAGCATTGCACTGTGACCATGACATCAATTCCAGGTCAAAAAAATCAAAGTGCAATCCTGCTGCTGCAGCAAGAAATAAACATCTGTGTGAGACCTTAGCAGATAGTTGTTTTCCTGTTAACACTGGCCCTGTGGCAAGCCGGCTTCACGAATTCTTCTTGCATCAATTCTGTGATGCCCACAGCTGTGCTGGAAGTGGGAAGCCTTTCTCCAGAGGGCGCAGGAAAAAGAAAAACGGGTTCTACATTGCTGCCTCCATTTTTCTCGTGACGCTGCTGCTATTTTACTATCTATACATTTACTTATATCGGAGAGGATTGAAAAGGGAAACTCAAATGCTGAAACGTATCTCACAAGCTGGCCGAAAAAAGAAGCCATCTTAA 828 0.4034 MNKILVGYHRFFVFLLLTRVSLTSSLPHTHNVHVDSDTTRILNQEQGDVHRIHCSRERSRIAWKIIQEYLTPVVEKEKYNISRKCRLHPENDIYRDQEQHKSHIDINEWQCGYCKKTFYEEKHLDQHFDNRHSNLLNLNESQCLADVCGALHCDHDINSRSKKSKCNPAAAARNKHLCETLADSCFPVNTGPVASRLHEFFLHQFCDAHSCAGSGKPFSRGRRKKKNGFYIAASIFLVTLLLFYYLYIYLYRRGLKRETQMLKRISQAGRKKKPS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00949 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 134 IPR013087 -
Vifa2g00949 275 ProSitePatterns Zinc finger C2H2 type domain signature. 111 132 IPR013087 -
Vifa2g00949 275 SUPERFAMILY Expressed protein At2g23090/F21P24.15 99 134 - -
Vifa2g00949 275 PANTHER ZINC FINGER PROTEIN-RELATED 23 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00949 Vifa-Chr2 254438285 254441034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00949 35 275 C2H2 Transcription Factor Family AT5G63280 58.436 4.16e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00949 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00949 - - lang:109338698 423.32