Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00935 ATGGAACACATGACAAGTATCGGAGATGGAGTGAATGATGAAAATGTGTTGTTTGGGATGATGGAAAGCGGCGGTAGTGGAGGTGGTGGCGGTGGTGGTGGTAATGATGACGTGAGTTTGAAGAAAGGTCCTTGGACAACGGGAGAGGATGCAATTTTGATAGATTATGTAACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAGAAATACAGGTTTAAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCTAATTTGAAAAAAGGTGCATTTTCTCATGATGAAGAGAAACTCATTGTTGAACTTCATGCTCAGTTTGGTAACAAATGGGCTCGAATGGCTGCATTGTTACCAGGACGAACAGACAATGAGATCAAGAATTACTGGAACACGAGAATCAAACGTCGTCAACGACAAGGTCTTCCTCTATATTCGGACGAACATGATCGTCCGAACACACCACCAACACCTTCACCGTGTGTTACACCAACAGGATCAAACCTTAATAACAACCTCACCCCGAAATTCGAGTTTTTCAACCAATATCATCAACAACAACATCATCTTCAACAACAACAACATCTACATCCTTTGTCTCCAACAACAACTCAACATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACAACATCAACATCAACAACATTCTTATTCTCCTCACACATTCTTGGACACTTCATCATCTTCTTTGCCTTCACTTTCGCCACTTTCCTTCACTTTTCAAAGACCTGCACCACTCTTATCTACGCCGCTTCGCTTCAAACGCTATCGTTCTACCCCAAATTTTGGACTAATCCCGAATTCCATGACACAAAATTGCTCTTCTTCACACAACGATCCTTCTTTAACTTCTCATTATCATCATCATAATCATCATGATAGCTTCCGGTTTCCAATGCAGTACAACTCGAGTTTTTCTCAATATTTTCATACTCCTTTGATAGAATCCGATCTAGGAGTTTCTTCTTCTTCGTCTTCGCCTTTCTTAACGAAGTTGGAGCTACCTTCAAACCAATATTCAAGAACACACTCAGAACAAGATGTTAAGGCTAATATTGATTTCAATGATCCAAATAATAGTATCTTAATGGGAGATATTTTAATGGAAGCACAAACCCTAGCATCTGGTCAAAATTCAAAGAAGAGAAATTACTTAAGCTTAAATGAAGGAAATGATATGTTTAATGGATGTCAAAGCATTGATGATTTTACACTAAGCTCTATTTATTGGCCTTCTAATTCAGGACAAAAACCAAAGGAAGAAGCACCAGATCTAAGCAAATTCATGGATGATGAATTGTCAACAATGCTAACAGTGATGCCTTCATCAACATTACAAATTCAAGATTGGAATAACAATAATAATAATAATAGTAATAATGATAATAATAATGATAATAATAATAATAATGCATTAGAAGTGAGCAATGTTCAATCTTCTAGTGGTGTGTTGGCAGATGAAGATTTTGGACTCGATGTTAAGCCTATAGCTTCATTGTTTCCTCTTACAAATACTACAAACAATGATAATAATAATGATGAAAACAATGGTTGCTACACTTGGGACAATTTATCTGGACTATGTTGA 1638 0.3724 MEHMTSIGDGVNDENVLFGMMESGGSGGGGGGGGNDDVSLKKGPWTTGEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSHDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDRPNTPPTPSPCVTPTGSNLNNNLTPKFEFFNQYHQQQHHLQQQQHLHPLSPTTTQHHSPLSSPLQHRQQQHQHQQHSYSPHTFLDTSSSSLPSLSPLSFTFQRPAPLLSTPLRFKRYRSTPNFGLIPNSMTQNCSSSHNDPSLTSHYHHHNHHDSFRFPMQYNSSFSQYFHTPLIESDLGVSSSSSSPFLTKLELPSNQYSRTHSEQDVKANIDFNDPNNSILMGDILMEAQTLASGQNSKKRNYLSLNEGNDMFNGCQSIDDFTLSSIYWPSNSGQKPKEEAPDLSKFMDDELSTMLTVMPSSTLQIQDWNNNNNNNSNNDNNNDNNNNNALEVSNVQSSSGVLADEDFGLDVKPIASLFPLTNTTNNDNNNDENNGCYTWDNLSGLC 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00935 545 Gene3D - 41 94 - -
Vifa2g00935 545 MobiDBLite consensus disorder prediction 18 42 - -
Vifa2g00935 545 CDD SANT 44 89 IPR001005 -
Vifa2g00935 545 SMART sant 94 142 IPR001005 -
Vifa2g00935 545 SMART sant 41 91 IPR001005 -
Vifa2g00935 545 SUPERFAMILY Homeodomain-like 39 136 IPR009057 -
Vifa2g00935 545 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Vifa2g00935 545 FunFam Transcription factor GAMYB 97 143 - -
Vifa2g00935 545 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 22 484 - -
Vifa2g00935 545 FunFam MYB-related transcription factor 41 94 - -
Vifa2g00935 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Vifa2g00935 545 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Vifa2g00935 545 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Vifa2g00935 545 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Vifa2g00935 545 CDD SANT 97 138 IPR001005 -
Vifa2g00935 545 Gene3D - 97 143 - -
Vifa2g00935 545 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Vifa2g00935 545 MobiDBLite consensus disorder prediction 143 174 - -
Vifa2g00935 545 MobiDBLite consensus disorder prediction 467 489 - -
Vifa2g00935 545 MobiDBLite consensus disorder prediction 190 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00935 Vifa-Chr2 249491286 249493148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00935 20 218 MYB Transcription Factor Family AT4G26930 52.358 6.87e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g00935 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00935 - - lja:Lj6g3v0869180.1 593.578