Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00933 ATGTTCTCCACCATTCTCACAAACGGCGTCCCCTCAAAATCCCACCTCCCTCATCCCAAAACCCGTTTCCCCCATTTCCCAATCCGCTCCGGAATCCGCGAAATCCGCGACCGAATCAACAGCGTCAAAACCACCCAAAAACTCACCGAAGCAATGAAACTAGTCTCCGCCGCCCGAGTCCGCCGCGCCCAAGAAGCCGTCATCAACGGCCGCCCCTTCTCCGAAACCTTCGCCCAAGTCCTCCAATCCATCAACCAACAGCTCCAATCCGACGACGTCCAAGTCCCTTTAACCGCCGTTCGTCCCGTCAAAAACGTCGCCCTCGTTGTCATCACCGGTGACCGCGGCTTATGCGGCGGTTTCAATAACTCCGTCGCCAAGAAAGCAGAAGCCAGAGTTCGCGAATTGAACAAACTAGGTATAGGTTGTGTTGTTATCAGTGTTGGTAAAAAGGGTAACTCTTATTTCAAACGTACGAGTTTTGTTCAAGTTGATAGATTCATCGAAAACCGCGGGTTTCCCACGACCAAAGATGCTCAGATTATTGCTGATGATGTTTTTTCACTTTTTGTTACTGAGGAAGTTGATAAAGTTGAACTTGTTTACACAAAGTTTGTTTCTTTAGTTAGGTTTAATCCTGTGATTCAAACATTGTTACCATTATCGAAAAAAGGCGAGGTTTTGGACGCCAATGGGAACTGTGTCGATGCCATGGGAGACGAGTATTTTAGGTTAACTTCTAAGGATGGAAAGTTGGCTTTGAAGAGAGATGTTGTGAAGAAGAAATCGAATGATGAGTGTGTTCCCATTATGGAATTTGAGCAAGATCCTGCTCAGATTCTTGATGCGATGATGCCGCTTTATTTGAATAGTCAGGTTTTGAAGGCGTTGCAAGAATCATTGGCGAGTGAACTTGCTGCTAGAATGGGTGCTATGTCGAATGCCACTGATAATGCTGTTGAGTTGACTAAGAATCTTTCTGTTGTTTATAATAGGGAGAGGCAAGCTAAGATTACTGGTGAGATTTTGGAGATTGTGGCTGGAGCTGAAGCATTAAAACCAATTGATTGA 1071 0.4556 MFSTILTNGVPSKSHLPHPKTRFPHFPIRSGIREIRDRINSVKTTQKLTEAMKLVSAARVRRAQEAVINGRPFSETFAQVLQSINQQLQSDDVQVPLTAVRPVKNVALVVITGDRGLCGGFNNSVAKKAEARVRELNKLGIGCVVISVGKKGNSYFKRTSFVQVDRFIENRGFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVLDANGNCVDAMGDEYFRLTSKDGKLALKRDVVKKKSNDECVPIMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKNLSVVYNRERQAKITGEILEIVAGAEALKPID 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00933 356 NCBIfam ATP synthase F1 subunit gamma 31 352 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 Pfam ATP synthase 32 352 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 CDD F1-ATPase_gamma 32 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 FunFam ATP synthase gamma chain, chloroplastic 30 97 - -
Vifa2g00933 356 PRINTS ATP synthase gamma subunit signature 299 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 PRINTS ATP synthase gamma subunit signature 103 122 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 PRINTS ATP synthase gamma subunit signature 330 351 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 PRINTS ATP synthase gamma subunit signature 196 213 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 Gene3D ATP synthase, gamma subunit, helix hairpin domain 251 352 - -
Vifa2g00933 356 PANTHER ATP SYNTHASE GAMMA CHAIN 26 352 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 FunFam ATP synthase gamma chain, chloroplastic 248 352 - -
Vifa2g00933 356 FunFam ATP synthase gamma chain 96 222 - -
Vifa2g00933 356 ProSitePatterns ATP synthase gamma subunit signature. 338 351 IPR023632 -
Vifa2g00933 356 Gene3D - 98 223 - -
Vifa2g00933 356 Gene3D ATP synthase, gamma subunit, helix hairpin domain 31 97 - -
Vifa2g00933 356 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 33 352 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 Hamap ATP synthase gamma chain [atpG]. 29 352 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vifa2g00933 356 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00933 Vifa-Chr2 248369747 248370817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00933 2 353 Primary Pumps ATPases AT1G15700 68.272 7.90e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00933 K02115 - qsu:112000322 471.855