Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00929 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGTCCGAGATTCAAGACTCTATTGATAATTTGCAATCTAGTTTTGAGCAATGGAATCGTAGTTCTGATGGGGTGGAGCGAGTGCGGGTTGCGAAGGAGGTTCTTGCTGGATGTGAGAGCATAGAGTGGCAGGTAGATGAATTGGAAAAAGCCATTGCTGTTGCTGCTAAGGAACCTTCTTGGTATGGCATTGATGACGCAGAGATTGAAAATCGGAGGAGATGGACAAGCAGTGCCCGTACTCAGGTTGTCACAATGAAGAAAACAGTGGATGCTGGAAAGAGCTCAAGCACAACAAGCATTAATGGGATGCACAGAGAACTAATGAGGCTACCGGATTCCTACCAAACTCATACATCCAACCATAATGCTGCCAATGACAATGATGATTTCATAGAATCAGAATCAGATAGACAGATGCTCCTTATAAAGCAACAGGATGATGAGTTAGATGAACTTAGTTTAAGCGTGCAAAGAATTGGAGGCGTTGGACTCACTATCCATGAAGAACTCATGGCACAGGAAAAGATTATAGATGAACTCGGTAACGAGATGGATAGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATATTGGGCTTGCTGGCCCTGTTCATTTTCCTATTTTTCTTAGTTTTTCTTACATAG 732 0.4249 MPSAQDPFYVVKSEIQDSIDNLQSSFEQWNRSSDGVERVRVAKEVLAGCESIEWQVDELEKAIAVAAKEPSWYGIDDAEIENRRRWTSSARTQVVTMKKTVDAGKSSSTTSINGMHRELMRLPDSYQTHTSNHNAANDNDDFIESESDRQMLLIKQQDDELDELSLSVQRIGGVGLTIHEELMAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFFLVFLT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00929 243 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vifa2g00929 243 Pfam SNARE domain 188 239 IPR000727 -
Vifa2g00929 243 Coils Coil 49 69 - -
Vifa2g00929 243 FunFam Syntaxin 10 3 104 - -
Vifa2g00929 243 Coils Coil 182 209 - -
Vifa2g00929 243 FunFam syntaxin-61 isoform X1 154 215 - -
Vifa2g00929 243 SUPERFAMILY SNARE fusion complex 149 213 - -
Vifa2g00929 243 CDD SNARE_NTD_AtSYP61-like 5 101 - -
Vifa2g00929 243 PANTHER GOLGI SNARE BET1-RELATED 118 239 - -
Vifa2g00929 243 SMART tSNARE_6 146 213 IPR000727 -
Vifa2g00929 243 CDD SNARE_Qc 154 211 - -
Vifa2g00929 243 Gene3D - 158 222 - -
Vifa2g00929 243 Gene3D - 2 104 - -
Vifa2g00929 243 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 151 213 IPR000727 -
Vifa2g00929 243 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00929 Vifa-Chr2 247037973 247041423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00929 55 243 SNARE and Associated Proteins AT1G28490 69.474 1.50e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00929 K08500 - gmx:100793612 347.821