Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00927 ATGGGATGTTTACTAAGTAAAGATAAAGATAAAGATTCAGAACCAGAACACAACAATGGTTATGGCTATAGATATGCTGAATCTTCTGGTCAACACAATCCTAGGAACAACCATGAACAAGTCAACCATTCAAGAACACCACAACCACATCAACCTGAAAAACAAAAGCAAGCTGCATCATCTCATATGATACCTTCGAAGCCTTCATCAGTTTCTGCTCCAAGTCCAAAACCTGTGATCAAGCAAGACACAAACACAATCCTAGGAAAAGGTTTTGAAGATGTGAGAGAGTTCTACACACTTGGAAAAGAATTGGGTAGAGGCCAATTTGGAGTAACATATCTATGTACTGAGAATTCAACTAGGCTGCTTTACGCGTGTAAGTCGATATCGAAGAGGAAGCTTGTGAGTAAATCTGATAGGGAAGATATAAAGAGAGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCAAATATTGTTGAGTTTAAAGGAGCTTATGAGGATAAGAATTCAGTTCATGTTGTCATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGACATTATAGTGAAAAAGCTGCTGCTATTATATGTAGACAAATTGTTAATGTTGTTCATATTTGTCATTTTATGGGGGTTATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTGTCTAGTAAAGATGAGAGTGCTCTTCTTAAGGCAACTGATTTTGGTTTGTCTGTTTTTATTGAAGAAGGAAAGGTGTATCGCGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTTCGACGCAGATGTGGAAAGGAAATAGATATCTGGAGTGCAGGAGTAATACTATATATCTTACTTAGTGGTGTTCCTCCATTTTGGGCTGAGAGTGAAAAGGGAATATTTGATGCAATATTGGAAGGTCATATTGATTTCGAAAGTGAACCGTGGCCTAAAATATCAAACAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCGAAGAAACGCATCACTTCCGCGCAGGTTCTAGAGCATCCATGGATTAAAGATGGAAATGCGTCTGATAAGCCAATAGACAGTGCAGTTCTTTCTAGAATGAAGCAATTCAGAGCTATGAACAAACTAAAGAAACTTGCATGGAAGGTCATTGCCGAGAATATGTCGGAAGAAGAGATCCGAGGTTTGAAATCGATGTTTACGAACATGGACACAGACAATAGCGGTACAATAACCTATGAAGAACTTAAAGCAGGATTGCAGAGACTTGGCTCAAAGCTATCAGAAGCTGAAGTTAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGAACAATTGATTGCATTGAATTCATCACTGCTACAATGCACAGACACAGGTTAGAAAGAGATGATCATCTTTACAAGGCCTTTCAATATTTTGATAAAGACAGCAGTGGGTTTATTACAAGAGATGAACTGGAAACTGCCATGAAAGAATATGGTATGGGAGATGATGCCACAATCAAGGAAATCATATCAGAAGTTGATACAATCATATCTGAAGTTGACACAGATCATGATGGTAGAATCAACTATGAAGAATTCTGTGCAATGATGAGAAGTGGAAACCAGCAACAACTTAAGATATTCTAA 1662 0.3815 MGCLLSKDKDKDSEPEHNNGYGYRYAESSGQHNPRNNHEQVNHSRTPQPHQPEKQKQAASSHMIPSKPSSVSAPSPKPVIKQDTNTILGKGFEDVREFYTLGKELGRGQFGVTYLCTENSTRLLYACKSISKRKLVSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSEKAAAIICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDESALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILEGHIDFESEPWPKISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLAWKVIAENMSEEEIRGLKSMFTNMDTDNSGTITYEELKAGLQRLGSKLSEAEVKQLMEAADVDGNGTIDCIEFITATMHRHRLERDDHLYKAFQYFDKDSSGFITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMRSGNQQQLKIF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00927 553 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Vifa2g00927 553 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00927 553 FunFam calcium-dependent protein kinase 1 185 364 - -
Vifa2g00927 553 SUPERFAMILY Protein kinase-like (PK-like) 97 379 IPR011009 -
Vifa2g00927 553 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g00927 553 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00927 553 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Vifa2g00927 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vifa2g00927 553 FunFam Calcium-dependent protein kinase 1 101 184 - -
Vifa2g00927 553 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Vifa2g00927 553 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Vifa2g00927 553 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vifa2g00927 553 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Vifa2g00927 553 Pfam EF-hand domain pair 474 543 IPR002048 GO:0005509
Vifa2g00927 553 SMART efh_1 475 503 IPR002048 GO:0005509
Vifa2g00927 553 SMART efh_1 439 467 IPR002048 GO:0005509
Vifa2g00927 553 SMART efh_1 403 431 IPR002048 GO:0005509
Vifa2g00927 553 SMART efh_1 517 545 IPR002048 GO:0005509
Vifa2g00927 553 FunFam Calcium-dependent protein kinase 1 364 546 - -
Vifa2g00927 553 CDD EFh 478 543 IPR002048 GO:0005509
Vifa2g00927 553 ProSitePatterns EF-hand calcium-binding domain. 526 538 IPR018247 -
Vifa2g00927 553 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Vifa2g00927 553 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00927 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 93 538 - -
Vifa2g00927 553 Coils Coil 421 441 - -
Vifa2g00927 553 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Vifa2g00927 553 MobiDBLite consensus disorder prediction 24 82 - -
Vifa2g00927 553 CDD STKc_CAMK 98 356 - -
Vifa2g00927 553 Gene3D - 365 549 - -
Vifa2g00927 553 ProSiteProfiles EF-hand calcium-binding domain profile. 513 548 IPR002048 GO:0005509
Vifa2g00927 553 MobiDBLite consensus disorder prediction 1 85 - -
Vifa2g00927 553 Gene3D Transferase(Phosphotransferase) domain 1 185 364 - -
Vifa2g00927 553 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Vifa2g00927 553 SUPERFAMILY EF-hand 385 544 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00927 Vifa-Chr2 244805157 244808363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00927 44 553 EF-hand Containing Proteins AT3G20410 76.550 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g00927 Pkinase 9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00927 K13412 - gmx:100798651 917.146