Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00899 ATGAACAAAGAGGATCTACGTTGGTGTTCTCGCGGGGGATTCGTAGGTAGCAGTGTTTCAACCACGACTCGTAATCTTAAATGGAAAAATCTGGCTATCCAAAAGGTTTGGAAGCAATCTGAGGATAAGCGGGACATAGCAGAAGAATGGAGAAAGTTGCATGCAGAGGCTAAGAGGAGGAAAGAGGAAGCTGAAAGTTCTTCAAGCAGGAGTTGCCAAAAAATTACACGTGCTGAACTTATGGACAAATACTATGAGTATGTCGAAAGAGAGGAATCGTACGAACTCAGAACAGGAAAGGTGAGAAGCTGTCTATCATGGGAAAAGTACTTTGAAATAGCCAGAGAGGAGGGATGGCTTACTGACATATCAGACGATGAGCCTGAACAGAATTCCACTGATGAAGCAATGGAATCAGCGGGCGATGTCGAGGAGAACAACACTATTGATGCTGCTGATGATGTTCAACCTCCTGCCATGCAAGAGAAACTTGTTTGCAGATGGCAGAAAGTTGTTAAGAGCAGCAGCCAGATAAAAAATCAAGTTCTTCACTTTCCAGCAGCAGTCATCAAGGAAATCTTCATGGAACCAAGATCATATATTGATCTTCATGACACAGACTCGGGTATTACGTACCAATGTGTTTTCAAATCCAAGGAGAACATGACGGAGACGTTTCTGTCAAGGGGCTGGTTAAAATTTGCAAAGGAGAAAGAGCTGTCGAAAGGTGACGTTCTCTTATTCAGTGTAGAGCATCCTCCTGTGGAACGTATATTGGTCAAAGTTGAGAGAGGGCAGCATTGA 804 0.4353 MNKEDLRWCSRGGFVGSSVSTTTRNLKWKNLAIQKVWKQSEDKRDIAEEWRKLHAEAKRRKEEAESSSSRSCQKITRAELMDKYYEYVEREESYELRTGKVRSCLSWEKYFEIAREEGWLTDISDDEPEQNSTDEAMESAGDVEENNTIDAADDVQPPAMQEKLVCRWQKVVKSSSQIKNQVLHFPAAVIKEIFMEPRSYIDLHDTDSGITYQCVFKSKENMTETFLSRGWLKFAKEKELSKGDVLLFSVEHPPVERILVKVERGQH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00899 267 MobiDBLite consensus disorder prediction 123 145 - -
Vifa2g00899 267 SMART B3_2 168 266 IPR003340 GO:0003677
Vifa2g00899 267 MobiDBLite consensus disorder prediction 123 141 - -
Vifa2g00899 267 Coils Coil 47 67 - -
Vifa2g00899 267 Gene3D - 145 264 IPR015300 -
Vifa2g00899 267 CDD B3_DNA 169 248 IPR003340 GO:0003677
Vifa2g00899 267 Pfam B3 DNA binding domain 168 261 IPR003340 GO:0003677
Vifa2g00899 267 SUPERFAMILY DNA-binding pseudobarrel domain 168 254 IPR015300 -
Vifa2g00899 267 ProSiteProfiles B3 DNA-binding domain profile. 168 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00899 Vifa-Chr2 235058594 235059763 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g00899 B3 8.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00899 - K14572 tpra:123891884 60.077