Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00887 ATGAGTTGTTTTCCATGTTGTGCTTCACAAGAGAGAATCAACAAAAGATCATTGAAGAAGAGTATTAAGGAATACCATGAAGCAAAAACTTTAACCTCGTTTGCAAATATCTCTTTTAAAACTGATAGTGGCAAGAGAAGGTTCATAGCAGATGAGATAGCAAAGCTTGGAAAAGGAAATGTTACCTCGAAGGTATTTTCGTATCGCGATCTATGCAACGCGACTCAGAATTTTCATCCCCCGAATATGATTGGAGAAGGAGGTTTTGGAAGAGTATACAAAGGAAAGATTAAAAGCACAAATCAGGTTGTTGCGGTGAAGCAACTTGACAGAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCATCATCAAAATCTCGTGAATTTAGTAGGTTATTGCGCCGAAGGTGACCAGAGGATTTTGGTATATGAGTATATGGAACATGGTTCCTTAGAAGATCACTTGCTTGATATAACTCCAGACAGAAAACCGTTGGACTGGAAAACTAGAATGAAGATTGCAGAAGGAGCGGCAAAAGGGCTTGAATATCTACACGAGGAAGCGAATCCTCCCGTGATATACCGCGATTTCAAAGCATCAAACATTTTATTAGATGAAAGCTACAATCCAAAGCTTTCAGACTTTGGACTTGCAAAACTCGGCCCGATTGGTGATAAGACACATGTATCCACCAGAGTGATGGGAACTTATGGCTATTGTGCTCCAGAGTATGCATCAACTGGACAGTTAAGTACAAAATCGGATGTGTATAGTTTTGGAGTTGTGTTCTTGGAGATTATCACGGGAAGGAGAGTCATCGACAATTCAAGACCGTCGGAAGAACAAAATTTAGTCATTTGGGCACAACCTCTTCTAAGAGATAGAAATAAGTTCACAAAAATGGCAGATCCATTGCTAGGAGATAACTACCCTACAAAAGGTCTATATCAAGCTCTAGCTGTTGCAGCAATGTGTCTTCAAGAGGAAGCTGATACGCGGCCGTTAATCAGCGATGTAGTTACCGCTCTTGAATTTCTAGCAAACAAGATAGATGGGGATGGAGAAAAAGCTACAAAACAGACTTTTGCTTCTCAAGGTGGAAATCATGAATCAAAACTTGTAAATATTGATGAAGACGACGATGAGGATGGTAATGACGACGATGATGATGATGATGATGAAGATGAGGATGACGACGAGGATGGTGATGACGATGACGAAGAGGATGAGGATGGTGACGATGATAATGATGATGAGAAGGTTCATAGAAGATTTAGTGAATGA 1311 0.3989 MSCFPCCASQERINKRSLKKSIKEYHEAKTLTSFANISFKTDSGKRRFIADEIAKLGKGNVTSKVFSYRDLCNATQNFHPPNMIGEGGFGRVYKGKIKSTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHQNLVNLVGYCAEGDQRILVYEYMEHGSLEDHLLDITPDRKPLDWKTRMKIAEGAAKGLEYLHEEANPPVIYRDFKASNILLDESYNPKLSDFGLAKLGPIGDKTHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVIDNSRPSEEQNLVIWAQPLLRDRNKFTKMADPLLGDNYPTKGLYQALAVAAMCLQEEADTRPLISDVVTALEFLANKIDGDGEKATKQTFASQGGNHESKLVNIDEDDDEDGNDDDDDDDDEDEDDDEDGDDDDEEDEDGDDDNDDEKVHRRFSE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00887 436 Pfam Protein kinase domain 82 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00887 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vifa2g00887 436 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Vifa2g00887 436 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Vifa2g00887 436 CDD STKc_IRAK 84 353 - -
Vifa2g00887 436 MobiDBLite consensus disorder prediction 367 436 - -
Vifa2g00887 436 SUPERFAMILY Protein kinase-like (PK-like) 64 358 IPR011009 -
Vifa2g00887 436 MobiDBLite consensus disorder prediction 385 425 - -
Vifa2g00887 436 PANTHER OS07G0668900 PROTEIN 3 361 - -
Vifa2g00887 436 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Vifa2g00887 436 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00887 436 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vifa2g00887 436 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00887 Vifa-Chr2 233406853 233408615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00887 60 361 Glycoside Hydrolase AT3G07070 70.861 2.86e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa2g00887 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00887 - - gmx:100790474 650.203