Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00877 ATGTCACCCAGTTTCATCTTCGACCCTCCCAGTGACGAAGAAATCGAACTCTCCGAGCACGAATCTGATTCGGAATCAGACCAAGAACAACCTGAATCACCATCTCCATCACAATCAGAATCAGAGCTAGAATCAGAAGAAGATGAAGTCATAGAACCGCGGGTTTCGAAAAAGAAAACACAGTCTCCATGGGATTTCACTAAATACTCTGAATCAGTAGCTGAAGAACACGCTCGTAGAAGTACTACCTCAGTAAATGACAAAATCTCAGCCGTCAGACAACGTTCAGCGCCGGTCGTTGCGTTGCCGGACTTGGATGAAGACAGTGCCTCTGACTCCGAGCCTGATAAACAAGAAGATTATAGACCAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGTGACACTAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCAGCGCTGATTCCTTCTTGCAACTCAATTTGTCTCGCCCGTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCGGCTTGTGTACCATTAGCATTGACTGGTCGTGATATATGTGGAAGCGCCATTACTGGATCAGGAAAGACAGCTGCTTTTGCACTACCTACTTTAGAGAGGTTGCTGTTTCGTCCAAAACGCGTGTATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCTGCCCAAGTTCACAGCATGATAGAAAAGCTTGCTCAATTTACTGACATAAGGAGTTGTCTGATTGTCGGTGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGTATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATCCTCGATGAAGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCAGAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTCCCTATCAAAACCACTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCATCCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTCAATCAGGAAGCAGTTCTTCTTGCAATGTGTACCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACAAAGCAAGCGGCACATAGACTAAGAATTATATTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGAAGCTTTGGAACAGTTCAGGAAGCAACAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGTCTTGACATTATCGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCGGGATCTGCTGTCACATTTGTTACTGATAATGATCGGTCACTTCTAAAATCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTGGCAGAGCAATCTATACTCAAGTGGTCTCAATTAATTGAGCAAATGGAGGATCAAATTTCTGAAGTACTTCAAGAAGAGAGGGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACACAGGGATGAGATCTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCAGCTAAAGCAGCAAAGGCATCCATGGACAAGGAAAATGGGTCTTCTCAGAAGATGGTTAGTGCCCAGGAAGCTGAAGACCTAAAATTGAAGGAAAAGAGGAAACGGGAGCGAGAGAAAAATATGCCTAGAAAGAAACGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGACAAGCCAAAAGGTAAGGGGACAGATAAGAATGAAAAGGGTGGAATGACACTTGCTGATCTTGCATACAGACGTGCAAAAGCAGTAAAGGCCGTCAAGAGGGCACTAGATTCTGGAAAGATTGTGAAGAAGCCTCAGAAGAAATCTAATAAATCCAATCCTCGAAAGACTTCCTCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAACAGAGAGGTTCTGGACTAGGAAAGAAGCCCAATAAATCATTCAAAAGCAAGTCAAGGTACAAAAGGAAGTAG 2277 0.4427 MSPSFIFDPPSDEEIELSEHESDSESDQEQPESPSPSQSESELESEEDEVIEPRVSKKKTQSPWDFTKYSESVAEEHARRSTTSVNDKISAVRQRSAPVVALPDLDEDSASDSEPDKQEDYRPEEEDEEEGNAGDTKSFFAPSDGASFSADSFLQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVYAIRVLILTPTRELAAQVHSMIEKLAQFTDIRSCLIVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPRKRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPSAKRPASLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKSIAKRAGSKLKSRIVAEQSILKWSQLIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKLSAKAAKASMDKENGSSQKMVSAQEAEDLKLKEKRKREREKNMPRKKRRKLEAAREMLEDEEQDDKPKGKGTDKNEKGGMTLADLAYRRAKAVKAVKRALDSGKIVKKPQKKSNKSNPRKTSSSRTEEMRELFQTDMKDKKPKQRGSGLGKKPNKSFKSKSRYKRK 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00877 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 530 IPR001650 -
Vifa2g00877 758 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 109 711 - -
Vifa2g00877 758 Coils Coil 529 567 - -
Vifa2g00877 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 511 IPR027417 -
Vifa2g00877 758 Pfam DEAD/DEAH box helicase 175 345 IPR011545 GO:0003676|GO:0005524
Vifa2g00877 758 MobiDBLite consensus disorder prediction 107 132 - -
Vifa2g00877 758 CDD SF2_C_DEAD 368 500 - -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 596 758 - -
Vifa2g00877 758 SMART helicmild6 406 491 IPR001650 -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 637 669 - -
Vifa2g00877 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 356 IPR014001 -
Vifa2g00877 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Vifa2g00877 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 302 310 IPR000629 -
Vifa2g00877 758 Gene3D - 113 357 IPR027417 -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 713 738 - -
Vifa2g00877 758 Pfam Helicase conserved C-terminal domain 388 491 IPR001650 -
Vifa2g00877 758 Gene3D - 358 528 IPR027417 -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 682 700 - -
Vifa2g00877 758 CDD DEADc_DDX27 162 357 - -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 1 141 - -
Vifa2g00877 758 SMART ultradead3 170 371 IPR014001 -
Vifa2g00877 758 MobiDBLite consensus disorder prediction 12 28 - -
Vifa2g00877 758 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00877 Vifa-Chr2 231475647 231483341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00877 105 508 Eukaryotic Initiation Factors Gene Family AT3G13920 31.941 5.81e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00877 K13181 - gmx:100791233 1056.59