Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00875 ATGATTTCATCATTGAGACAACCTAGCATTTCGATCAGTGGTTCTGATGTTGTTTTAAGGAAAAGACATGCAACCCTAATTCAGCCACAACCACAATCGTTTTTACCTTTACTGTCAAGAGAGAAATCACTGAGATCTGTTGTTTCGTTGAAGAAGCCTCTTCATCTTGCATGTATTGGTGTTGGAAATTTTGGGTCAGTGGAGAAATTTGAATCAGATGAGAGTTTTGGGAAAACTGATTTGGTGAAGTGTGGAGCTTATGAAGGTGATAGATCAGAGGTTGAAGGTGGTGGTGGAGCATCATCAGAGGCTGCTAAGAAGGTGAAAATCGGGATATATTTTGCGACTTGGATTGCTGAAGCTCCTAAGACTGATCTTGAGTTTTGGAAGACTTTGTTCCCTGTTGCTGTTGCGCACACGATTGGACATGTAGCGGCTACGGTTAGTATGTCCAAAGTTGCAGTATCATTTACGCATATCATCAAGAGTGGCGAGCCTGCTTTTAGTGTTCTTGTTTCGAGGTTTGTTTTGGGCGAGACTTTCCCCGTGCCGGTCTATCTGTCTCTACTTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGATCGGTTTTATGGGGGCTATGATATCAAATCTGGCATTTGTGTTCCGAAATATCTTTTCCAAAAAGGGGATGAAGGGAAAATCCGTTAGTGGAATGAATTACTATGCTTGTTTGTCTATTTTGTCCCTTGTGATTCTCACACCCTTTGCAATCGCCGTGGAAGGACCGGCAATGTGGGCAGCTGGATGGCAAACAGCTCTCTCTGAAATCGGACCCCAATTCATATGGTGGGTAGCTGCTCAGAGTATATTCTATCATCTATACAATCAGGTGTCTTACATGTCGTTGGACGAGATCTCTCCTTTGACATTTAGCATTGGAAACACCATGAAACGTATATCAGTCATAGTATCTTCAATTATCATCTTCCACACACCAATCCAGCCTGTCAATGCTCTGGGAGCCGCAATTGCCGTCTTTGGAACCTTCTTATACTCACAGGCAAAACAATAG 1077 0.429 MISSLRQPSISISGSDVVLRKRHATLIQPQPQSFLPLLSREKSLRSVVSLKKPLHLACIGVGNFGSVEKFESDESFGKTDLVKCGAYEGDRSEVEGGGGASSEAAKKVKIGIYFATWIAEAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFVLGETFPVPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLVILTPFAIAVEGPAMWAAGWQTALSEIGPQFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPIQPVNALGAAIAVFGTFLYSQAKQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00875 358 Pfam Triose-phosphate Transporter family 108 354 IPR004853 -
Vifa2g00875 358 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 114 357 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vifa2g00875 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 257 355 - -
Vifa2g00875 358 PANTHER SOLUTE CARRIER FAMILY 35 123 357 - -
Vifa2g00875 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 117 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00875 Vifa-Chr2 230403438 230406897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00875 1 357 Antiporters AT5G54800 63.300 5.21e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00875 K15283 - gmx:732659 547.354