Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00864 ATGGATAAACCTCGCAACTCTATGAACAAACCTATATCTCATATTAAGATCGAGGAAGACACTGATACTACTGAGAAACCAATTCTTATCAAAATATCGGCTGGAAATGATGTCGTGGAATCCATCATCAACGTTGCTTTGCTTCATCAAGCTAATATCACAGTACTAAAAGGTAGTGGTTTTATCTCTGATCTTACTTTTCATGACCCAGTGTCTCATTCCTATGTATTCACATTACACGGACCATTCCAAATGACATCTATCTTAGGAGAATATGTTAACACAAAGTATAGTTGTGTTCCTTCTGAGCTCATCAATGAACCTATTTATTCCTCCTTTTCTATTTTCCTAACCCGTGGTGATGGAAAAGTGTTTGGTGGAGTTGTTGAAGGAAAGGTTAAGGCTGCAAGTGATATTCTAATCTCCGCCACTCTTTCAAAGAAGTCCAAGTATTTTAGGGGAGGCCACCATCATTTGAAGTATTCAAGAATTTGA 495 0.3758 MDKPRNSMNKPISHIKIEEDTDTTEKPILIKISAGNDVVESIINVALLHQANITVLKGSGFISDLTFHDPVSHSYVFTLHGPFQMTSILGEYVNTKYSCVPSELINEPIYSSFSIFLTRGDGKVFGGVVEGKVKAASDILISATLSKKSKYFRGGHHHLKYSRI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00864 164 ProSiteProfiles PPC domain profile profile. 22 164 IPR005175 -
Vifa2g00864 164 Gene3D - 26 161 - -
Vifa2g00864 164 Pfam Plants and Prokaryotes Conserved (PCC) domain 26 142 IPR005175 -
Vifa2g00864 164 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 152 IPR014476 GO:0003680
Vifa2g00864 164 SUPERFAMILY AF0104/ALDC/Ptd012-like 26 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00864 Vifa-Chr2 227835672 227836166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00864 3 153 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 26.797 2.22e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00864 - - cam:101498013 140.969