Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00863 ATGACACCAAAAATAACACTATTGATAGCGGCTGGAAACAATGTCGTGGAGTCCATCATCAACGTTGCTTTGCTTCATCAAGCTAATATCACAGTACTAAAAGGTAGTGGTCTTATCTCTGATCTTACTTTTCACGACCTAGTGTCCCATGCCCATGTATTCACATTACATGAACCATTCCAAATTCCTTCTATCTCAAGAGAATATGTTACCACAAACTATAGTTATGTTCCTTCCGAGCTCATCGATGAACCTACTTATTCCTCCTTTTCTATTTTCCTAACCCGTGATGATGGAAAAGTGTTTGGTGGTGTTTTTGAAGGAAAGGTTAAGGCTGCAAGTGATATTCTAATCTTCGCCACTCTTTCAAAGAAGTCCAAGTTTTTTAGGGGAGGACACCATCATTTGAAGTATTCAAGAATTTAA 426 0.3826 MTPKITLLIAAGNNVVESIINVALLHQANITVLKGSGLISDLTFHDLVSHAHVFTLHEPFQIPSISREYVTTNYSYVPSELIDEPTYSSFSIFLTRDDGKVFGGVFEGKVKAASDILIFATLSKKSKFFRGGHHHLKYSRI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00863 141 Pfam Plants and Prokaryotes Conserved (PCC) domain 6 121 IPR005175 -
Vifa2g00863 141 Gene3D - 5 141 - -
Vifa2g00863 141 SUPERFAMILY AF0104/ALDC/Ptd012-like 6 121 - -
Vifa2g00863 141 ProSiteProfiles PPC domain profile profile. 1 141 IPR005175 -
Vifa2g00863 141 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 126 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00863 Vifa-Chr2 227745327 227746213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00863 1 120 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 26.230 1.00e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00863 - K11959 mtr:11435238 109.768