Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00853 ATGGCAACTGAAGAGCATAATGTCGCGAAGGCTGAAGAATTTAAAGTCCTTGCTAACCAAGCATTCAAAGATCGGAAATTTTCCCACGCTATTGATCTATATACACAAGCAATTGAGCTAAACAGTCAAAGTGCAGTTTACTATGCTAATCGTGCCTTTGCCCATCTCCGGCTTGAGGAATACGGTAGCGCGATATTAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGATATTACAGGCGAGGTGCTGCTCATCTTGGGTTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAAAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTGAAATTTGAAGAAGCTATTGCTGTACCAGGATCTGTGAAACGCCCAATAGCCGAAACCATAGATTTTCGTTCAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGGTGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTTATGTTGTTGAGGACATCAAAGACCACATTAGTAGCTGCGGTTGTTGTCGTTGGTTTGCTGTTGGTCTTTTGGACATTTTGGTGGAATGGCTACAATTCTGATGTCGAGCCACAGTATTCTGGAGCAAAAATAGAGGGAGATGTTATTACGTTGGATTTTGTAAAGAAAATGATGGATGATTTCAAGAAACAGCAATGCTTGCATAAACGGTATGCATTCCAGATTGTATTGCAAACAAAAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATAACTGTTCCAAATGGAAAACACTTTACTGTTTGTGGTGACGTGCATGGTCAGTTTTATGATCTTATGAATATTTTTGAGCTCAATGGTCTTCCTTCAGAAGAAAATCCATATCTATTTAATGGTGACTTTGTGGATAGAGGATCATTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTCAAGTGCATGTCTCCTTCAGCCATATATCTAGCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGAAACGTTTGTCGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTCCACGGAGGTCTTTTTAGTGTTGACGGGGTCAAACTCTCTGAAATCCGATCAATTAATCGGTTTTGCGAGCCTCCTGAGGAAGGGTTGATGTGTGAGTTGCTATGGAGTGATCCACAGCCTCTCCCTGGAAGAGGCCCGAGCAAGCGTGGTGTAGGACTTTCTTTCGGTGGAGATGTTACAAAAAGGTTCTTGAAGGAAAATAACTTGGATTTAGTCGTCCGATCACATGAAGTAAAGGACGAGGGATATGAGATTGAACATGACGGTAAACTCATAACTGTGTTCTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAAGGTGCCTTTATCCGATTTGAAGCGCCTGATTTGAAACCTAACATTATTACATTCGCATCAGTGCCACACCCTGATGTTAAGCCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1626 0.4133 MATEEHNVAKAEEFKVLANQAFKDRKFSHAIDLYTQAIELNSQSAVYYANRAFAHLRLEEYGSAILDATKAIEVDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPGSVKRPIAETIDFRSIGKGRNSSVPTEGAIAAVTVAVMAVVVMLLRTSKTTLVAAVVVVGLLLVFWTFWWNGYNSDVEPQYSGAKIEGDVITLDFVKKMMDDFKKQQCLHKRYAFQIVLQTKEMLQALPSLVDITVPNGKHFTVCGDVHGQFYDLMNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSEIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLKENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIITFASVPHPDVKPMAYANNFLRMFS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 279 306 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 462 482 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 342 366 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 406 433 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 309 336 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 484 500 IPR006186 GO:0016787
Vifa2g00853 541 PRINTS Serine/threonine phosphatase family signature 376 402 IPR006186 GO:0016787
Vifa2g00853 541 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Vifa2g00853 541 Pfam Calcineurin-like phosphoesterase 279 473 IPR004843 GO:0016787
Vifa2g00853 541 SMART tpr_5 11 44 IPR019734 GO:0005515
Vifa2g00853 541 SMART tpr_5 79 112 IPR019734 GO:0005515
Vifa2g00853 541 SMART tpr_5 45 78 IPR019734 GO:0005515
Vifa2g00853 541 Pfam Tetratricopeptide repeat 47 77 IPR019734 GO:0005515
Vifa2g00853 541 Pfam PPP5 TPR repeat region 214 271 IPR013235 -
Vifa2g00853 541 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 534 - -
Vifa2g00853 541 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Vifa2g00853 541 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vifa2g00853 541 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vifa2g00853 541 FunFam Serine/threonine-protein phosphatase 5 205 540 - -
Vifa2g00853 541 PIRSF PPPtase_5 1 541 - -
Vifa2g00853 541 Gene3D - 208 540 IPR029052 -
Vifa2g00853 541 SUPERFAMILY Metallo-dependent phosphatases 227 535 IPR029052 -
Vifa2g00853 541 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Vifa2g00853 541 CDD MPP_PP5_C 219 534 IPR041753 -
Vifa2g00853 541 Gene3D Tetratricopeptide repeat domain 2 150 IPR011990 GO:0005515
Vifa2g00853 541 SUPERFAMILY TPR-like 6 137 IPR011990 GO:0005515
Vifa2g00853 541 SMART pp2a_7 247 523 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00853 Vifa-Chr2 223452662 223459219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00853 282 463 Calmodulin-binding Proteins AT5G63870 37.500 4.60e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00853 K04460 - gmx:100820099 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00853 2 223452662 223459219 Vifa2g00853 2 223452662 223459219 ECH