Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00851 ATGGCTTCATCGAATTCACCATGTGCTGCATGCAAGTTTCTCCGCCGAAAATGCACGCAAGAATGCGACTTCGCTCCTTATTTTCTCCCTGAAAATCCACAGCGATTCGCGAATGTGCACCGTGTCTTTGGTGCAAGCAACGTTGCTAAGCTCTTGAAAGAGCTTAACGTGGCTGACCGCGAAGACGCGGTGAGATCTTTGGCTTACGAGGCGGAGTCTCGTTTGAAAGATCCTATCTATGGATGTGTAGGTTTGATCACGGTTCTCCAACAGAGGTTACGCGATATTCAAACCGAGCTAGCTCTTGCAAAGAAAGAATTAGCCACTTACAATTCAAATCCTCAGGTTATGCAGTTCTTGTTTGGGAACCCTGGTGCGGGGTTGCAACAACAGCATCAACAATGGAATAATGCACATAATGCACAGTTTGCAGGTGTTGCTAATGCTAATTACTCGTATAATTTTCCGCATGAGATGCTCGCAGGCGCGGGGTTGGTTACGCGCGATGTTCAGCAGGAGCAAGAGCTTCTTGAGGCTCAGCAGATAGTTGCTGCTCAGCAAGATTATTTGCTTAGGTTTAGCGGACTTCATGTCGGTGGCGGTGGTGGTGGCGGTGGTGGTGGTAGTTCTGTTTCTGGTCATGCTGATATGGCTCATTCATTGGGCATAGGGAGCTTTGAGAATGGTGGTAGCGGCGGTAGTAGCAGCGGCTGTGGTTATTATCAGATTCAGCAACAACAGGGAGAGGCGCAACCGCAACACCAGAATTATAATCCTCATGTTGGTGTTGCTGCTGCGGCGAATCCACCTGAGAATTCAGGTGTGTTATCTCCTCAGAATCAGGAGAATGGTGGTGAGGATGGTAGGAGTGTTGGTAGCACTCATCGTTCTAGTTGA 897 0.4861 MASSNSPCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELNVADREDAVRSLAYEAESRLKDPIYGCVGLITVLQQRLRDIQTELALAKKELATYNSNPQVMQFLFGNPGAGLQQQHQQWNNAHNAQFAGVANANYSYNFPHEMLAGAGLVTRDVQQEQELLEAQQIVAAQQDYLLRFSGLHVGGGGGGGGGGSSVSGHADMAHSLGIGSFENGGSGGSSSGCGYYQIQQQQGEAQPQHQNYNPHVGVAAAANPPENSGVLSPQNQENGGEDGRSVGSTHRSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00851 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 150 - -
Vifa2g00851 298 MobiDBLite consensus disorder prediction 272 298 - -
Vifa2g00851 298 MobiDBLite consensus disorder prediction 245 298 - -
Vifa2g00851 298 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vifa2g00851 298 Coils Coil 86 113 - -
Vifa2g00851 298 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00851 Vifa-Chr2 222989441 222990337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00851 1 117 AS2 family AT5G66870 71.795 3.59e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa2g00851 LOB 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00851 - - psat:127080212 439.499