Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00846 ATGGCTGCAAGCTTTGCTTCCAGATGTTCCCGTGCGGGCCGATCTTTGTTTGGCGGATTAAGCAACAGTTCCCCTGGTCTATTTACAACGACACATGAGATGACATGCAGCAATTATCTTACTCAGCAACAACGAACCTTCATACAGATGAGAACTGTTCTAAAGGTTGTGGACAATTCCGGGGCTAAAAAAGTGATGTGCATACACGCATTGAAAGGGAAGAAAGGAGCAAGATTAGGTGATATGATAAAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTTAAGAAGGGATCAACCGTGTTTGCCGTAGTTGTTCGCGCAGCAATGCCGAAGGGTAGATGTGATGGAAGTGAGGTGAAGTTTGATGACAATGCTGTGGTGCTGGTTGACAAGCAAGGGCAACCTATTGGGACAAGGGTTTTTGGACCAGTTCCTCATGAACTGAGGCAGAAGAAGCATGTCAAAATCCTTACCTTAGCTGGGCATATCGCATAG 501 0.4551 MAASFASRCSRAGRSLFGGLSNSSPGLFTTTHEMTCSNYLTQQQRTFIQMRTVLKVVDNSGAKKVMCIHALKGKKGARLGDMIKASVKEAHPNGKVKKGSTVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00846 166 NCBIfam 50S ribosomal protein L14 48 165 IPR005745 GO:0003735|GO:0006412|GO:0015934
Vifa2g00846 166 Gene3D Ribosomal protein L14 47 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g00846 166 FunFam 50S ribosomal protein HLP, mitochondrial-like 47 166 - -
Vifa2g00846 166 SUPERFAMILY Ribosomal protein L14 48 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g00846 166 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Vifa2g00846 166 Hamap 50S ribosomal protein L14 [rplN]. 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00846 166 Pfam Ribosomal protein L14p/L23e 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00846 166 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00846 166 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00846 Vifa-Chr2 221153107 221160151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00846 58 149 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 38.384 1.08e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00846 K02874 - gmx:100818301 300.827