Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00845 ATGGCTGCAAGCTTTGCTTCCAGATGTTCCCGTGCGGGCCGATCTTTGTTTGGCGGATTAAGCAACAGTTCCCCTGGTCTATTTACAACGACACATGAGATGACATGCAGCAATTATCTTACTCAGGTAACGCAACAACGAACCTTCATACAGATGAGAACTGTTCTAAAGGTTGTGGACAATTCCGGGGCTAAAAAAGTGATGTGCATACACGCATTGAAAGGGAAGAAAGGAGCAAGATTAGGTGATATGATAAAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTTAAGAAGGGATCAACCGTGTTTGCCGTAGTTGTTCGCGCAGCAATGCCGAAGGGTAGATGTGATGGAAGTGAGGTGAAGTTTGATGACAATGCTGTGGTGCTGGTTGACAAGCAAGGGCAACCTATTGGGACAAGGGTTTTTGGACCAGTTCCTCATGAACTGAGGCAGAAGAAGCATGTCAAAATCCTTACCTTAGCTGGGCATATCGCATAG 507 0.4556 MAASFASRCSRAGRSLFGGLSNSSPGLFTTTHEMTCSNYLTQVTQQRTFIQMRTVLKVVDNSGAKKVMCIHALKGKKGARLGDMIKASVKEAHPNGKVKKGSTVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00845 168 Gene3D Ribosomal protein L14 49 168 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 SUPERFAMILY Ribosomal protein L14 50 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 50 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 FunFam 50S ribosomal protein HLP, mitochondrial-like 49 168 - -
Vifa2g00845 168 Hamap 50S ribosomal protein L14 [rplN]. 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 Pfam Ribosomal protein L14p/L23e 50 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 SMART Ribosomal_L14_2 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vifa2g00845 168 NCBIfam 50S ribosomal protein L14 50 167 IPR005745 GO:0003735|GO:0006412|GO:0015934
Vifa2g00845 168 ProSitePatterns Ribosomal protein L14 signature. 106 132 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00845 Vifa-Chr2 221153107 221160151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00845 60 151 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 38.384 1.13e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00845 K02874 - gmx:100818301 295.819