Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00843 ATGGCCGCTCACATCACTTCTACCACCACCACCACCACCACTAACATCATGCCAACACCAACATCTACACAATTGTTCCCTAGGAGAAACAATAATCTCCTTATAGATTCAAGGGAGTTCCTTGCCTCATCCTCCTCGAAAAAGCCTAAAGGTAGACCTTTAGGCTCTAAGAATAGACCCAAACCACCTGTTGTTATTGAGGGAAACCCTAACATGTTAATGGAACCAATTTTCATCCAGATCCCAGCTGGAAATGATGTTGTTGGGGCTCTCATCAACTTGGCTCGAAGTCATCGGGCTAATATCACCGTATTGAGTGGTTCTGGTCTTGTCTCTAATGTTACCCTTTTGCACTCCATATCCCGTGTCCCTGCTTTCCCTATCAAAGAAACATTGCATATGGTATCTCTCTCTGGAACTTATGTGAATGCCAACTCTGTTGGTATCCCTCGCCAATTTGTTGCTGACCAATCACGTTCATCGTTCTCCATTTATTTTTTTGGAGATCGTAGACAGATGATTGGTGGCGTTATTGGAGGAAAGATTGAGGCTGTTAGTGTTGTTACCATTAGGGCCACTCTTTTTAAAAATCCAGAGTTTCATAGGGTGGCTATTATTAACGGAGTTTTTCAAGAAATTGAAGGCAATGACACAATCTATGCTGGTGGTGTCATTCCTAATGTTGATCGTGTTGCATATGAACCTGCCACCAACAACCATAATGGAACTCATGTGCAAGACATCAATGTTATGGGTTCCAGTTTAGCTCAACCAAATCATCAAATGATTCATCCTTCTCTTCCACCAAATGTGAATTTCATGCAGTGGAATCGCAACCGCTCCACCCGTAATGATAACTATTAG 864 0.4248 MAAHITSTTTTTTTNIMPTPTSTQLFPRRNNNLLIDSREFLASSSSKKPKGRPLGSKNRPKPPVVIEGNPNMLMEPIFIQIPAGNDVVGALINLARSHRANITVLSGSGLVSNVTLLHSISRVPAFPIKETLHMVSLSGTYVNANSVGIPRQFVADQSRSSFSIYFFGDRRQMIGGVIGGKIEAVSVVTIRATLFKNPEFHRVAIINGVFQEIEGNDTIYAGGVIPNVDRVAYEPATNNHNGTHVQDINVMGSSLAQPNHQMIHPSLPPNVNFMQWNRNRSTRNDNY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00843 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 211 IPR014476 GO:0003680
Vifa2g00843 287 CDD DUF296 76 146 IPR005175 -
Vifa2g00843 287 ProSiteProfiles PPC domain profile profile. 70 216 IPR005175 -
Vifa2g00843 287 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g00843 287 Gene3D - 75 214 - -
Vifa2g00843 287 MobiDBLite consensus disorder prediction 41 65 - -
Vifa2g00843 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 196 IPR005175 -
Vifa2g00843 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00843 Vifa-Chr2 220755916 220756779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00843 47 203 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.366 2.53e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00843 - - psat:127080935 360.533