Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00840 ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAATTAGGAAGAGGAAAGATTGAAATCAAGAGGATCGAGAACACTACAAATAGACAAGTCACCTTTTGCAAACGCCGCAATGGATTGCTAAAGAAAGCTTATGAATTATCCGTTCTTTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCGACTCGCGGCCGCTTGTACGAGTATGCTAACAACAGTGTTAGAGCAACAATTGAAAGGTACAAAAAAGCATGTGCTGCTTCTACTAATGCAGAATCTGTATCTGAAGCTAATACTCAGTTTTACCAGCAAGAATCATCAAAATTGAGAAGACAAATTCGAGATATTCAGAATTTAAATAGACACATCCTTGGTGAAGCTCTTGGATCTTTGAGTTTGAAGGAACTAAAGAATCTTGAGGGAAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCAAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGAAACAGAAGTAA 525 0.3905 MELPNEGGEGSSQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKRKQK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00840 174 Coils Coil 105 125 - -
Vifa2g00840 174 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Vifa2g00840 174 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 ProSiteProfiles K-box domain profile. 102 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa2g00840 174 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Vifa2g00840 174 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 159 - -
Vifa2g00840 174 Gene3D - 28 124 IPR036879 GO:0003677|GO:0046983
Vifa2g00840 174 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Vifa2g00840 174 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vifa2g00840 174 Pfam K-box region 100 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00840 Vifa-Chr2 219047536 219051433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00840 6 171 MADS-box Gene Family AT2G42830 80.588 1.86e-99 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa2g00840 K-box 9.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00840 K09264 - gmx:100808734 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00840 2 219047536 219051433 Vifa2g00840 2 219047536 219051433 ECH