Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00831 ATGCAGCAAGATCATAGAAAAAAGAATTCGACGGAGATGGACTTTTTCTCTGAGTACGGCGATGCCAACCGGTACAAAATTCAAGAAGTCATTGGTAAAGGAAGCTACGGTGTTGTCTGTTCGGCCATTGACACTCATACTGGTGATAAAGTCGCCATTAAGAAAATTCACGACATTTTCGAGCATATATCTGATGCTGCGCGTATTCTCCGTGAGATAAAGCTGCTTAGACTTCTACGACATCCTGATATTGTTGAAATAAAACATATTATGCTTCCTCCTTCTAGGAAGGATTTCAAAGATATTTATGTTGTTTTTGAGCTCATGGAGTCGGATCTTCATCAAGTCATTAAAGCGAACGATGACTTAACGAAAGAGCACTATCAGTTTTTCCTTTATCAATTGCTTCGAGCGCTGAAGTATATTCACACTGCGAATGTCTATCATCGAGATTTGAAGCCAAAAAATATACTGGCAAATGCAAACTGTAAACTTAAAATTTGCGATTTTGGTCTTGCTAGAGTTGCATTCAGTGACACACCGACGACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGGGCTCCAGAGTTATGCGGATCGTTTTACTCAAAGTATACACCAGCGATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTATTAACAGGAAAGCCTCTTTTTCCTGGAAAAAATGTAGTCCATCAATTGGATCTGATGACAGATCTGCTCGGTACTCCCTCACTGGATACTATATCACGGGTGCGCAACGAGAAGGCCAGAAGATACCTTACTAGCATGAGGAAAAAACAGCCTGTGCCATTTGCACAAAAATTTCCAAATGCCGACCCGTTAGCTCTACGACTATTGGAAAGGTTGCTTGCTTTTGACCCAAAAGACCGACCTACTGCTGAAGAGGCACTGGCCGACCCTTACTTCAAGGGACTGGCCAAAGTTGAGAGAGAACCGTCCTGCCAGCCTATTACCAAAATGGAGTTTGAATTTGAAAGAAGAAGAGTCACAAAGGAAGAAATTCGAGAGCTAATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTTTTAAAAGACTACATCAATGGAACAGAAAGAACTAATTTTCTCTATCCAAGTGCCGTGGATCAATTCAGAAAGCAGTTTGCTCATCTAGAGGAAAATGGTAAAAATGGTCCTGTTATACCACTTGACCGAAAACATGTTTCTCTTCCAAGGTCAACAATTGTACACTCAAATTCGATACCTCAAAAAGAGCAAACAAGTATTGCTTCTAGCAAAAACCGGCCAACACCCCAGGAATATAATAAGATCACTCGAGATACTGAAATTCCCGTGCCAAGGACGATCCAGGGACCACAAAGAATTCCACTATCAAAGCCTGGTAAAGTTGTCGGGCCGGTTGTTCCCTACGAGTATGGAAATATTATTAAGGATTCTTACGATCCAAGAGCGTTTATCAGAGGTTCTTCTGTGCTTCCTCCTCAACCTGTTCCGCCAGCATATTACTATCAAAGGCCGCCTAGTAGTACTTCTAATCAAGAAAGGTCAGCGACAGAAGCTGACAAAGGTGTCGTGTTGCAAGCAAAACACGGACAACAACAATGCGGAGTTAATGCGAAGATGGGACCAGATATAGCCATTAATATTGATACAAATCCCTTTTTCATGACAAGGGTAGGAGTAAACAAGTTAGAAAAAGATGATCAGATTGCTATAGAAACAAACTTGTTGCAATCAAAGGCGGTGCAATATGGCGGAGTTGGTGCTGCAGCTGGGGCCACTGCTCATAGAAAAGTTGGAACTGTTCAATATGGTATGACAAGAATGTTCTAG 1857 0.4146 MQQDHRKKNSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGDKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVIPLDRKHVSLPRSTIVHSNSIPQKEQTSIASSKNRPTPQEYNKITRDTEIPVPRTIQGPQRIPLSKPGKVVGPVVPYEYGNIIKDSYDPRAFIRGSSVLPPQPVPPAYYYQRPPSSTSNQERSATEADKGVVLQAKHGQQQCGVNAKMGPDIAINIDTNPFFMTRVGVNKLEKDDQIAIETNLLQSKAVQYGGVGAAAGATAHRKVGTVQYGMTRMF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00831 618 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00831 618 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa2g00831 618 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00831 618 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vifa2g00831 618 MobiDBLite consensus disorder prediction 512 526 - -
Vifa2g00831 618 FunFam Mitogen-activated protein kinase 111 339 - -
Vifa2g00831 618 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 362 - -
Vifa2g00831 618 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vifa2g00831 618 CDD STKc_TDY_MAPK 24 361 - -
Vifa2g00831 618 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vifa2g00831 618 MobiDBLite consensus disorder prediction 504 530 - -
Vifa2g00831 618 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00831 618 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vifa2g00831 618 FunFam Mitogen-activated protein kinase 15 118 - -
Vifa2g00831 618 MobiDBLite consensus disorder prediction 415 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00831 Vifa-Chr2 216026954 216031451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00831 1 462 MAP Kinase Gene Family AT2G42880 84.665 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa2g00831 Pkinase 8.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00831 - - gmx:100815293 1107.05