Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00821 ATGTCTTCCAACTTTTCTTTGAATGTCGAGTTGTCGAAGAAAACTTCAGTTTGGGGTTTAAGGCTATGGGTTTTGATTGGAATAGGTGTTGGTGCATTTATAGTTTTAATTCTTTGTATATTATCTACATGGATACTGTTTCGGAGAAAAACAAGGAGATCGAGATCCGTAGACAAGTACTCGTTATCTCAAATACCTCACGACTCAAAGGATATCAAAGTTGACAAGATTGGAGTGAATCCGTCTCATGATGAACTAGAGAGTGTGTCTGTTCATGTACATGATAATGCGGCAAATGATAAGAATTCAGATTCAGATAAGTTGTTTGTTCATTTGAGCAAATCAAGTGAACCTGATAATATTAGTCGGAGTAGCTCGGTTTATCATCATGATAGGGGGTTAAGTTTGATGTCGATAGAAGATGGGAACTTTGGAACTGTTAAGAAGCAGTATACAGTAACTGCGTCTCCTCTGGCTGGCTTGCCTGAAGTTTCTCATCTTGGGTGGGGCCATTGGTTCACACTAAGAGATCTTGAGCTTTCAACTAACCGTTTTTCCGCAGAGAATGTGATTGGTGAGGGCGGATACGGAGTTGTTTACAAGGGAAAATTGATCAATGGGTCTGAGGTGGCAGTGAAGAGACTTTTTAACAACTTGGGACAGGCAGAGAAAGAATTCAGAGTTGAAGTCGATGCTATAGGCCATGTCAGACATAAAAACCTTGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACACGGGGCAATGAGACAACATGGGGTACTCACATGGGAAGCTCGCATGAAAGTTATTCTCGGCACAGCCAAAGCGCTTGCTTACTTACACGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATTTTGATCGATAGCGATTTCAACGGAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCCGAGTGATGGGAACATTTGGTTATGTTGCACCAGAATATGCTAACTCCGGCTTGTTAAATGAGAAAAGCGACATTTACAGCTTTGGTGTTCTCCTACTCGAAGCAATTACCGGAAGAGACCCTGTAGACTATACACGTCCTACCAACGAGGTGAATCTTGTTGAGTGGCTCAAGATGATGGTGGGGTTAAGGAAGGCTGAGGAAGTCGTAGACTCGAGCATTGAAGTGAAACCGCCGACACGTGCATTAAAGCGCGCTCTTCTTGTTGCATTTAGGTGCGTTGATCCTGAGGCTGAGAAGAGACCTAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGATGAATATCCGTTCAGAGAGGATCAAAGAAATAGAAAGAGCCGCGGCGTCAGCATGGATATTGAATCTATAAAGGATAACTCTGGTCCTTCGTATACCGATAAGATGAAAGGTTCAGAAGAATGCACGCCAGAGACACCTGAAAGACAGCAATCACACTTGGATAATGAAGGATTAATCAAGAACATGATGGTACATCAAATTTGCAAGGATAGATGGAGGAGTTAG 1602 0.4207 MSSNFSLNVELSKKTSVWGLRLWVLIGIGVGAFIVLILCILSTWILFRRKTRRSRSVDKYSLSQIPHDSKDIKVDKIGVNPSHDELESVSVHVHDNAANDKNSDSDKLFVHLSKSSEPDNISRSSSVYHHDRGLSLMSIEDGNFGTVKKQYTVTASPLAGLPEVSHLGWGHWFTLRDLELSTNRFSAENVIGEGGYGVVYKGKLINGSEVAVKRLFNNLGQAEKEFRVEVDAIGHVRHKNLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSDFNGKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPTNEVNLVEWLKMMVGLRKAEEVVDSSIEVKPPTRALKRALLVAFRCVDPEAEKRPKMSQVVRMLEADEYPFREDQRNRKSRGVSMDIESIKDNSGPSYTDKMKGSEECTPETPERQQSHLDNEGLIKNMMVHQICKDRWRS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00821 533 Gene3D Phosphorylase Kinase; domain 1 164 260 - -
Vifa2g00821 533 CDD STKc_IRAK 191 457 - -
Vifa2g00821 533 ProSitePatterns Protein kinases ATP-binding region signature. 191 213 IPR017441 GO:0005524
Vifa2g00821 533 SUPERFAMILY Protein kinase-like (PK-like) 169 458 IPR011009 -
Vifa2g00821 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Vifa2g00821 533 FunFam Putative receptor-like protein kinase 167 260 - -
Vifa2g00821 533 MobiDBLite consensus disorder prediction 464 515 - -
Vifa2g00821 533 ProSiteProfiles Protein kinase domain profile. 185 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00821 533 FunFam Putative receptor-like serine/threonine-protein kinase 261 471 - -
Vifa2g00821 533 MobiDBLite consensus disorder prediction 464 478 - -
Vifa2g00821 533 PANTHER OS01G0323000 PROTEIN 1 479 - -
Vifa2g00821 533 Gene3D Transferase(Phosphotransferase) domain 1 261 473 - -
Vifa2g00821 533 SMART serkin_6 185 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00821 533 MobiDBLite consensus disorder prediction 496 513 - -
Vifa2g00821 533 Pfam Protein kinase domain 187 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00821 Vifa-Chr2 212683301 212685746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00821 16 459 Trihelix Transcription Factor Family AT1G70460 40.969 1.70e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa2g00821 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00821 - - gmx:100813931 791.186