Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00792 ATGTTTCATTTTCTCATTCCTAGGTTCATTCATCATACAACACTTCAATGCCGCAATGTTCTCTCTCTTTTCTTCAATCCTCGCTATTTTTCTCACCAATCTGACAACAACCTTACACTATCCAACCTCGTTAACTCATGTAACTTGTCCCCTGAAACTTCCCTTAAACTCTCCAAAAGGTTGAAACTCGTAAAAAACCCTAACGGCCCTGATGCTGTCATTCAACTTTTCAGAAACTATGGCTTATCCGATTCCCAGTTATCAAAGCTTGTCAAGAAACGCCCTTTTCTCCTTTTATCAGATCCCCAAAACACCCTTTTGCCAAAGCTCAAGTTTTTGCAATCCATTGGTGTTTCCACCACTGATTTCCCCAAAATCCTAATTGGGAACACTTCCTTTTTGTCAGCAAACTTGGAGAATAACCTAATACCTCGCTATCAAATTGTTCGAAGCCTTGTTCGTGACGATAAAGAAGTTGTTTCGGCTTTGAAACACGGCTCATGGATTTTTTACAATGATTCCATGGTTAATGATTCTGTTCCAAACATTGAGATTTTGAGGAAACTCGGTGTGCCACAACGTTTTGTTTCGCTTTTGGTTTGTTATTTTCCTAGTGTTGCATTCAACAAGCATTCTGTATTTGTTGAGGCTGTTGATTCCGTCATCCAAATGGGGTTCAATCCTTTGCAACTTAATTTTGTTTTGGCACTTCGAGTAATTGTGAGTATGGACAAAGAAAACTGGGAATCAAAGTTTAAGATTTATGCGAAGTGGGGCTGGTCGAGAGATGTCTGTCTTTTGGCTTTCCGAAAGCGGCCTCAGTGTATGTTGATGTCGGAAAAATGTATTAATAAAGCAATGAGCTTCTTGGTGAAGGACGCAGGTCATACACCAGAAGACATTGCTAAGTTCCCGGTGATTCTGTCCCGCAACTTGGAGAAGGTACTTGTCCCTAGATTTGCAGTAGTTAAGATTTTGAAATCGTCGGGTTTGAAAAAGAGTGGTTTGACCTTAGGCAGCTTTACTTTGATAAGTGGAGAAAAGTTTCTTGAGAAATATGTGACCCCATTTCAGAAAGATTTGCCATTGTTATTGGATGCATATAAGGATGCGTATAAAGCACATAAGACAGATTAA 1137 0.3967 MFHFLIPRFIHHTTLQCRNVLSLFFNPRYFSHQSDNNLTLSNLVNSCNLSPETSLKLSKRLKLVKNPNGPDAVIQLFRNYGLSDSQLSKLVKKRPFLLLSDPQNTLLPKLKFLQSIGVSTTDFPKILIGNTSFLSANLENNLIPRYQIVRSLVRDDKEVVSALKHGSWIFYNDSMVNDSVPNIEILRKLGVPQRFVSLLVCYFPSVAFNKHSVFVEAVDSVIQMGFNPLQLNFVLALRVIVSMDKENWESKFKIYAKWGWSRDVCLLAFRKRPQCMLMSEKCINKAMSFLVKDAGHTPEDIAKFPVILSRNLEKVLVPRFAVVKILKSSGLKKSGLTLGSFTLISGEKFLEKYVTPFQKDLPLLLDAYKDAYKAHKTD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00792 378 Gene3D Transcription termination factor 3, mitochondrial 150 361 IPR038538 -
Vifa2g00792 378 Pfam mTERF 240 341 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 Pfam mTERF 74 258 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 PANTHER CGI-12 PROTEIN-RELATED 40 356 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 FunFam Mitochondrial transcription termination factor-like 138 361 - -
Vifa2g00792 378 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 SMART mt_12 231 261 IPR003690 GO:0003690|GO:0006355
Vifa2g00792 378 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00792 Vifa-Chr2 200917304 200918440 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa2g00792 mTERF 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00792 K15032 - gmx:106799612 369.392