Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00790 ATGTATCATTTTCTCATTGCTAGATTCACCCATCATAGGATTCATCACTCTAGTGTTCTATGCCGCAATGCGTTTTCTCTTTTCTTCGATTCTCGTTCTTTTTCCGTTTCCAACACAAACCACTATCATCAACCTGAAAACTTTACCTTGTCAACCCTCGTAAATTCATGCGGGTTGTCCCCTGAAACCGCCCTTAAACTCTCCAAAAGGTTGCAAACCAAAAACCCTAATGGCCCAAATGCTGTAGTCCAACTTCTCACCAACCATGGCTTCTCTGATTCCCAGTTACGTATCTATGTCAAGAAACACCCTTTGGTACTTTTATCAGATGCCCAAAACACCCTTTTGCCAAAGCTCAAATTTTTTCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATCCTAATCGGGAACACTTTCTTTTTGTCAAAAAGCTTGCACAAACACCTAATACCTCGTTATGAGGTCATTAGGAGCCTAGTTTGCAATGATAAAGAGGTGGTTTCAGCTTTGAAGCATTGTTCAAGGAACCTTCACTGTGGTTGGGCTGTAAAGGATGCAGCTCTCAACATTGAGGTTTTGAGGAAGCTTAATGTGCCTCAAGGTTGTATTTCCCTTTTGGTATCCAATTTTTCTGGTGTAGCATTCACCAAGCATTCTGTATTTGTTGAGGCTGTTAATTCAGTCAAGGAACTGGGTTTCGACCCTTTGAAGTCGAATTTTGTTTTGGCACTCCAGGTGTTTGCGAAAATGAACAAGGATATTTGGGAATCAAGATTTAAGATTTTCAAGAAATGGGGTTGGTCAAGAGATATGTGTCTTTCGGCTTTCTTAAAGCATCCGCAATATGTGATGATTTCAGAAGAAAAGATTATAAAAGTAATGAACTTCTTGGTGAATGATGTTGGTGTTAGCCCCGAAGATATTGCCAGAATGCCTGGTATTCTGAACCGCAACTTGGAGAAGACGTTTATCCCTAGATGGGCTGTTGTTAAAATTTTGAGGTCAAGGGGTTTGGTAAAGAGTGATTTACGCATAAGTAGCGTTATTTCCATAAGTGAGAAAAAGTTTTTGGAACGATATGTAACCCGATTTCAAAAAGATGCGCCCCTGTTATTGGATGCATATAATGGTTAG 1140 0.4018 MYHFLIARFTHHRIHHSSVLCRNAFSLFFDSRSFSVSNTNHYHQPENFTLSTLVNSCGLSPETALKLSKRLQTKNPNGPNAVVQLLTNHGFSDSQLRIYVKKHPLVLLSDAQNTLLPKLKFFQSIGVSTTDLPKILIGNTFFLSKSLHKHLIPRYEVIRSLVCNDKEVVSALKHCSRNLHCGWAVKDAALNIEVLRKLNVPQGCISLLVSNFSGVAFTKHSVFVEAVNSVKELGFDPLKSNFVLALQVFAKMNKDIWESRFKIFKKWGWSRDMCLSAFLKHPQYVMISEEKIIKVMNFLVNDVGVSPEDIARMPGILNRNLEKTFIPRWAVVKILRSRGLVKSDLRISSVISISEKKFLERYVTRFQKDAPLLLDAYNG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00790 379 Pfam mTERF 84 236 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 Pfam mTERF 254 359 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 PANTHER CGI-12 PROTEIN-RELATED 47 365 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 FunFam Mitochondrial transcription termination factor-like 147 370 - -
Vifa2g00790 379 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vifa2g00790 379 Gene3D Transcription termination factor 3, mitochondrial 146 369 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00790 Vifa-Chr2 200656132 200657271 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa2g00790 mTERF 8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00790 K15032 - gmx:106799612 446.432