Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00786 ATGAAGAATAATATTTCAAAGAGAAGTGGTGTAAGAAAGTATCATAAATCAGAACAGCCACGCCTTCGATGGACTCCGGAACTTCATCAATACTTTGTTCAAACTGTTGAAAGTCTTGGTGGAAAACACAAGGCAAGTCCAAAACACATTTTGAATATCATGCAAGTGAAGGGACTCAGAATCTCTCACATTAAAAGTCATCTTCAGATGTACAGGAACGTGAAGAGAGAGATCATACTTGAAGAAAATTCACAGTTCAATCATTGCTCCACTTCTTCACCCCAAAGATCAAAGGATATCATTGAAGAGTTTCATCCTTTATATAATAGAGGACTTTCACAAACAAGTGAAACTGGTCGTTATGATCTAAATCAGGAGCCCGAGTCAAGTGTATGCTTTCATAGTGATATGTCTAATGAAGAAGGAAATTGTATGAGTACCAAATATCTAAATCTCCCATTCCCTTTCAGTTCTCTGTTAATTCCAGTGGTGCACAGTAATCAAGGAAAAACCGAATTTTCTTCAACAAATAAACACGTAGTAGATTCTAATTCTATGAAATCTAGCGATCATATAAACTTAGACCTATCAATTTGA 597 0.3568 MKNNISKRSGVRKYHKSEQPRLRWTPELHQYFVQTVESLGGKHKASPKHILNIMQVKGLRISHIKSHLQMYRNVKREIILEENSQFNHCSTSSPQRSKDIIEEFHPLYNRGLSQTSETGRYDLNQEPESSVCFHSDMSNEEGNCMSTKYLNLPFPFSSLLIPVVHSNQGKTEFSSTNKHVVDSNSMKSSDHINLDLSI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00786 198 Gene3D - 19 76 - -
Vifa2g00786 198 FunFam Two-component response regulator 15 78 - -
Vifa2g00786 198 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Vifa2g00786 198 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 105 IPR046955 GO:0003700
Vifa2g00786 198 SUPERFAMILY Homeodomain-like 18 76 IPR009057 -
Vifa2g00786 198 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 73 IPR006447 GO:0003677
Vifa2g00786 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00786 Vifa-Chr2 200012307 200018211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00786 9 79 G2-like Transcription Factor Family AT1G14600 60.563 5.32e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa2g00786 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00786 - - psat:127085289 331.643