Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00772 ATGAACAACACTGTTCCTGAATGGAATTTTGGGAGTGATAATACCCTTGTCACCAATCAAAAGAAGCAATCTATGGGGCTTGATCATGAACTTGTGGAGCTTCTATGGGAGAATGGTCAAGTAGTATTGCATAGCCAAACAAATAAGAAACCAATGAATTCAAGACATGTTCATAAGAATCTTCAATCAACAACATTAAGCAACTTGATTCAAGATGATGAAACTGTTTCGTGGATCCATCAATACCCTCTTGAGGATCCAATCGGACAAGAGTTGTGTTCGAATCTTTTATCCGAACTTCCACCTTGTCACGTCGACTCTTACGATTCACAACCGACTAATACGAAACCGTCTTTTGTCGAGGAATTCTCAATTCCTAGGTTTCATCATCATGTTCCTGATTCGTTGCAAAAAAACAATGATTTGTGTGGAACGAACAAGGTCGTGAACTTTTCTCACTTTTCAAGACTTCCTAATGTTTCTTTAGCATGTAATATCGGCGACAGAGATTTAAGAGACAAAGTTACGGGGAATCTGTCGCAATGTGATATTAGAGAGAGCTCGGCGATGACAGTTGGTTTGAGTTATTGTGGTAGCAACCAAGTCCCTCAAGATGTGGATGTAAGCAGGGTATCAAGCGACGGTGTTTGGACAAATACTATATCGGCTGAGCCTCAGCGAGTCAAAGACGATATTCAGAGAACAACAATTCCTAGGCATGAGAAAGGGAAATCGCCGACTTTTACTTCATCTTCCGGTGGTTCGGGAAGTAGTCTTGAAAAAACATGTTCCTTATCTACAAGAAGTCATGGAAAAAAGAGAAAAGCGATGGATGTCGAAGATTCGGTGGAACAAAGCGAGGACACAGAACTTAAATCAGCCTTGTCAAACAAGGTGTCTCAAAGGTCAGGGTCGGGTCGAAGGAATCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAAAGCACTGCAACAACTCATACCTCACAGCAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGACACCAATGATGCATCCTGGATTTCAGCACTACGTGACACAAATGGGCATGGGAATGCCTACACCTTCATTTCCTCCGCTCCAAAATCCGTTGCAATTACCGAGAATGCCTTTTGATCCGTCAGTACCGTCGTCTCAGACACCAAATCCGACGTTAACGAGTCAAACTCCTCTTTTTGGCGCCTTTAATTACCAAAATCAGATGCAAACTCCAGCTCTTCCAGAGCAATACACTCGTTACATGAACTATCATCTTATGCAAAACGCTTCTCAGCCGATGAATATGTACCGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATAATTCCAACCAGCAATAACAGTGGAACAATGAATGGAGCAGCAAACATTAATGATAATGTGAGTGCCAAAATTGGTAGGCCAATACATAACTCTCTATTGTCATAG 1548 0.4147 MNNTVPEWNFGSDNTLVTNQKKQSMGLDHELVELLWENGQVVLHSQTNKKPMNSRHVHKNLQSTTLSNLIQDDETVSWIHQYPLEDPIGQELCSNLLSELPPCHVDSYDSQPTNTKPSFVEEFSIPRFHHHVPDSLQKNNDLCGTNKVVNFSHFSRLPNVSLACNIGDRDLRDKVTGNLSQCDIRESSAMTVGLSYCGSNQVPQDVDVSRVSSDGVWTNTISAEPQRVKDDIQRTTIPRHEKGKSPTFTSSSGGSGSSLEKTCSLSTRSHGKKRKAMDVEDSVEQSEDTELKSALSNKVSQRSGSGRRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMHPGFQHYVTQMGMGMPTPSFPPLQNPLQLPRMPFDPSVPSSQTPNPTLTSQTPLFGAFNYQNQMQTPALPEQYTRYMNYHLMQNASQPMNMYRYGPQTVQNSQTIIPTSNNSGTMNGAANINDNVSAKIGRPIHNSLLS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00772 515 MobiDBLite consensus disorder prediction 289 307 - -
Vifa2g00772 515 MobiDBLite consensus disorder prediction 271 288 - -
Vifa2g00772 515 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Vifa2g00772 515 FunFam Basic helix-loop-helix transcription factor 305 368 - -
Vifa2g00772 515 CDD bHLH_AtPIF_like 310 373 IPR047265 -
Vifa2g00772 515 PANTHER TRANSCRIPTION FACTOR PIF3 15 478 IPR044273 GO:0003700|GO:0006355
Vifa2g00772 515 Coils Coil 316 336 - -
Vifa2g00772 515 SMART finulus 316 365 IPR011598 GO:0046983
Vifa2g00772 515 Gene3D - 306 366 IPR036638 GO:0046983
Vifa2g00772 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Vifa2g00772 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 376 IPR036638 GO:0046983
Vifa2g00772 515 MobiDBLite consensus disorder prediction 242 265 - -
Vifa2g00772 515 MobiDBLite consensus disorder prediction 227 241 - -
Vifa2g00772 515 MobiDBLite consensus disorder prediction 222 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00772 Vifa-Chr2 194975942 194978010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00772 8 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.089 8.99e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g00772 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00772 K16189 - gmx:100784531 630.943