Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00771 ATGATGCAGGTTCTCGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTTGAAGGAAAAGCCTTCTTCGGTGATAAAGGCGGTGGTACTAATTTTGTTGCTCCTGGTTACACAAAAGGAGATGGACTTGGTGCTGAGATTATTGGTACCTTTGTTCTTGTTTACACCATTTTCTCAGCCACTGATGCCAAACGTAGTGCCAAAGACTCTCACGTTCCTATTTTGGCACCTTTGCCAATTGGGTTTGCTGTGTTTTTGGTTCATTTGGCCACTATTCCAATCACTGGAACTGGTATCAACCATGCTAGGAGTCTTGGTGCTGCAGTTATCTTCAACCAAGATCGTGGCTGGAATGATCAATGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTATATTACTTTACCACAACAATACATTTGCTTCCAACTTCGGCAAGTTTCGGTCTTCGTCTGATTCCCTCTGCACCGCTGGAATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTCGCGAGGAAACTGTCTCTAACAAGAGCAGTGTTCTACATCTTGATGCAGGTTCTCGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTTGAAGGAAAAGCCTTCTTCGGTGATAAAGGCGGTGGTGCTAATTTTGTTGCTCCTGGTTACACAAAAGGAGATGGACTTGGTGCTGAGATTATTGGTACCTTTGTTCTTGTTTACACCGTTTTCTCAGCCACTGATGCCAAAAGTAGTGCCAAAGACTCTCACGTTCCTATTTTGGCACCTTTGCCAATTGGGTTTGCTGTGTTTTTGGTTCATTTGGCCACTATTCCAATCACTGGAACTGGTATCAACCCTACTAGGAGTCTTGGTGCTGCAGTTATCTTCAACCAAGATCGTGGCTGGAATGATCAATGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTATAGTACTTTACCACAACAATACATTTGCTTCCAACTTCGGCAAGTTTCGGTAA 1020 0.4471 MMQVLGAICGAGVVKGFEGKAFFGDKGGGTNFVAPGYTKGDGLGAEIIGTFVLVYTIFSATDAKRSAKDSHVPILAPLPIGFAVFLVHLATIPITGTGINHARSLGAAVIFNQDRGWNDQWIFWVGPFIGAALILLYHNNTFASNFGKFRSSSDSLCTAGISGGHINPAVTFGLFFARKLSLTRAVFYILMQVLGAICGAGVVKGFEGKAFFGDKGGGANFVAPGYTKGDGLGAEIIGTFVLVYTVFSATDAKSSAKDSHVPILAPLPIGFAVFLVHLATIPITGTGINPTRSLGAAVIFNQDRGWNDQWIFWVGPFIGAALIVLYHNNTFASNFGKFR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00771 339 FunFam Putative aquaporin PIP-type 7a 203 333 - -
Vifa2g00771 339 SUPERFAMILY Aquaporin-like 2 144 IPR023271 -
Vifa2g00771 339 Pfam Major intrinsic protein 156 327 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 Pfam Major intrinsic protein 2 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 ProSitePatterns MIP family signature. 165 173 IPR022357 -
Vifa2g00771 339 PRINTS Major intrinsic protein family signature 310 330 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 PRINTS Major intrinsic protein family signature 234 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 PRINTS Major intrinsic protein family signature 270 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 Gene3D Glycerol uptake facilitator protein. 156 336 IPR023271 -
Vifa2g00771 339 Gene3D Glycerol uptake facilitator protein. 1 155 IPR023271 -
Vifa2g00771 339 NCBIfam MIP family channel protein 156 325 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa2g00771 339 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 157 329 IPR034294 -
Vifa2g00771 339 SUPERFAMILY Aquaporin-like 156 332 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00771 Vifa-Chr2 194653476 194663660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00771 157 328 Major Intrinsic Protein MIP AT1G01620 83.721 1.62e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00771 K09872 - gmx:100791447 286.574