Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00754 ATGGCGTTCTTTACAAACTTTTCATTATATGCAGTGTCACGCAGAGTATTGAAAGTTGAAGGCCAAAGAAAGAATGCTGACAGAACTTGCAGATCAGTTGGTAGTGAATGTGTTGATGCAACTTCTAGTGAAAATGAAGCTGACATGAACATGGAGGCACAATACGAGAGTGATGCTGAACCAGATGAAGCTGGTAGGAAGCAAAAGGAGGCAACTGCTGATGATCGGGTTGATACAAGAGAACTAAATGAAGAGACTATGAGCAGGAACCCATCTACTAATGGAAGGTGGGGTTCTTCATTTTGGCAAGACTGCCAGCCTATGTGCTCTCAGAATGGCTCTGAATCTGGGCCTGAATCAGAAAGTGGATCAGACTACAGAAATGTAGATGAATCTGAACATCATTCATCGGAAGGAAGAGAAGAAAGATTGGGCTCAGCAGAAGAAGATGGACACGAGGATTCAGGAAAAGGTCAAAGGGGACATTCCGATGTTCCTGCTGAAGAGATGCTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAACAGAGTGACTCGATGCATGCCAGGGGTTTTCGTCGATCTACGGCATCAAATTCATGCCTTCAACGGAAGTCGACTAATGTCAATAGGGGTGTTGTGCATAGGAAATCTAGGACTTTAGATGATTCTGAGGATGACGATGGTGATGCTGATTATGAAGAAGATGAATCAGATGAAGATGATCCTGATGATGCAGACTTTGAACCTGCAACAAGCCGTCGTGGTGCAAACAAGGATAAAGATCGGGAAGGAGAGGACTCAGATGAAGCTGATGATAGTGATGAGGACATAGATGTTTGGGATAACGATGATTCTTATTTAGATAAGAAGGCTAAGGGAAAGCAGCGAGGTAAATTTCGACGAAGTGTAAGACCAACCAGAGATCGTAAAGCATGTACTGCATCCAGTCGACAAAGAAGAGTTCAAGCATCTTTTGAAGATGAAGATGATGACTCTACAGCAGAGGATTCTGACAGTGAGAGTGATGAAGATTTCATAAGCTTGAAGAAGAGACGTGTGCATGTACGCAAGAATAATGTCCGATCACCTGCACCCACAAGTTCATACAGGCACAGCAATGAGGTTCGCTCTTCTACTAGAACAGTTAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGCTGCTGATGAAGGGAAGAAGTCTCAAAAGGAAGAAATTGAAGAAGACGACAGGGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAAAGGCATGGCTGCAGAGGCTCAAGAGAATAATCAATCAATGGAGCCTGTTTTAATGAGTCACTTATTTGATTCTGAACCTGATTGGAACAACATGGAATTTTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAGTGGAAGTCATTTATCATGCTCCAAAATCTCAGTGGTTTTAAAAAAGTTTTGAATTATACCAAGAGAGTGACAGAGGAAATCAGGTACAGGATGAGAATATCGAGAGAGGAGATTGAGATCAACGATGTCAGTAAGGAGATGGACATAGATATTATCAAACAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATTAGCAAAGACAATTCTGGCAATGTTATTCCAGAATATTTGGTCAAGTGGAAAGGACTGTCTTATGCTGAAGTGACCTGGGAGAAGGACATTGATATTGCTTTTGCTCAAGACGCTATTGATGAATATAAGGCTCGCGAGGCTGCAATGTCAGTGCAAGGAAAGATGGTGGTAGATCTTCAGCGTAGGAAGAGCAAAGCAAGTTTACGGAAACTTGATGAACAGCCGGAATGGTTGAAGTGTGGAAAGCTTCGTGACTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGATAAATGATACAAATGTCGTTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCACGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACGTTATCGAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAACGTTATTGTTTATGTTGGTACTCGTTCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGAGAACAAAGCTGGCAGGCCAATTAAATTCAATGCACTGTTGACTACATATGAAGTAGTTCTGAAGGATAAAGCTGTTCTCTCAAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTTAAAAATAGCGAGGCCCAGTTGTATACCGCACTTTCAGAATTCAACACAAAGAACAAGTTGCTGATCACCGGGACTCCACTGCAAAATAGTGTTGAAGAGCTATGGGCCTTGCTCCACTTCCTTGATTCTGATAAGTTCAAGAGCAAAGATGAATTTGTCCAAAACTATAAGAATCTAAGTTCTTTCAATGAAAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATACTTAGAAGAATTATCAAAGACGTAGAGAAATCGTTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGACATGTCTCCTCTGCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCATGATTTAAACAAGGGAGTTCGAGGGAACCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAATCATCCCTTCCTGTTTGAAAGTGCTGACCATGATTATGGTGGAAACTCTGAAAGTAGTGACAGTAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTTCTTGTCAGATTGCATGAGACAAAGCATCGTGTACTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCACAGTATCTGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGGAGTACAAAATCTGAGCTGCGACAACAGGCAATGGAACATTTCAATGCACCAGGCAGTGATGATTTTTGCTTTCTTCTTTCAACACGAGCAGGTGGTCTGGGTATCAACCTGGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTCGAGCTCATCGAATTGGGCAACAGGAAGTTGTAAACATATATAGATTTGTTACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAAACTGGAGAAGAAAGAGGCCAAAAAAGGAGGAAGCTTTTTTGACAAAAATGAACTCTCAGCAATCTTAAGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGACGAAGAAAGCAAGAAGCGACTCTTAAGTATGGACATAGATGAGATCCTCGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAAATGAGGGTGGACAAGCACATGGGTTATTAAGTGCCTTTAAGGTTGCTAATTTTTGTAATGACGAAGATGATGGAAGTTTCTGGAGCCGATGGATAAAAGCTGATGCTGTCGCTCAGGCAGAGAATGCTCTTGCTCCTCGTGCTGCAAGAAATATCAAAAGCTATGCAGAGAATGATCAGTTTGAAAGAAGTAATAAAAGAAAAAAGAAGGAAAGTGAACTACCTGAACGTATTCCGAAACGTCGGAAAGCAGAGCATTCAGCTCATGTAACACCAATGATTGACGGAGCATCTGCCCAAGTGAGAAGCTGGTCAAATGGAAATTTGTCTAAACGAGATGCACTCCGTTTTTCCCGTTCGGTAATGAAATTTGGGAATGAGAGCCAAATCAATTTGATTGCTGCTGAAGTTGGTGGTGCAGTAGAAGCAGCTCCGCTCAAAGCACAAGCAGAACTCTTCAATGCTTTGATTGATGGCTCTAGAGAAGCAGTGGAAGTTGGAAGTCTGGATCTGAAGGGGCCTTTGTTGGATTTTTATGGTGTCCCGGTGAAGGCAAATGAGTTACTTATCCGTGTTCAAGAACTTCAATTGCTAGCAAAGCGCATTAGTCGGTACGAAGATCCTGTTGCACAATTCCGTGTTTTAACATATCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTATCATGGATTTGGTAATTGGGAAATGATAAGATTGGATGAAAGGCTTGGTCTTATGAAAAAAATTGCACCAGTAGAACTACAGCACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTGAGAGACCGGACTAATGCCCTGTTGGAGCAAGAACTCGCTGTTCTTGGTGTGAAAAATGCCTATAGCAAAGTTGGAAAGAAGACTTCCAAGAAAGATAAAGAACATCTTGTAGACATCTCATTGTCACGTGTGCGGGAGAAAAAGAAAAACACAGGTTCTTATAAAGTTGATGTCCAAATGAGAAAGGATAAACTTCAGAAACCTCTAAAAGTTGAACCTATTGTAAAGGAGGAGGGTGAAATGTCTGATGATGACGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGTTGGAATGGTGTCAAGATGTGATGGTTGAAGAAGGGAAAACTTTGCAACGTCTTCAGAGGTTGCAGAGAACCAGTGCCGATCTTCCGAAGGAGAAGGTGCTTTCAAAAATCCGTAACTACTTGCAGCTTCTAGGGCGAAGGATAGATCATATTGTCTCAGAACAGGAGGTCGAACCCTATAAGCAAGATAGAATGACTACAAGATTGTGGGAGTATGCTTCTACCTTTTCCCATCTTTCAGGGGAGAGGCTTCGCCAAATTTATTCAAAACTTAAATTGGAGCAAAATGCGGCAGGGGTTGGCCCCTCTCTTCCCAATGGGTCAGTATCTGGTCCATTTAGCCGAAATGGGAACACTAATCATTTCCCTCGTCATATGGAGAGGCAGAGGGAACTCCAAAATGAGACTGCCTACCGAGTGACCAAACCAACTAGTGAGACAGACATGTCTGACGCATGGAAACGAAGACGAAGAGCTGAAAATAATGGCCATGGTCATTTTCAGGGTCAGCCACAACCTCGGAGAGTCACGAGTAATGGAATTCGACCGCTAGATACTAACTCGATGGGCATCCTTGGGGCAGGACCATCTGATAAACGTCTTGCTGGTGAAAAGCATTCAAGACTCAACCTGGTGGGTGTCCTTCAAGACAAGAATACTCTCCGGGAAGCGAGTAGTTAG 5283 0.4174 MAFFTNFSLYAVSRRVLKVEGQRKNADRTCRSVGSECVDATSSENEADMNMEAQYESDAEPDEAGRKQKEATADDRVDTRELNEETMSRNPSTNGRWGSSFWQDCQPMCSQNGSESGPESESGSDYRNVDESEHHSSEGREERLGSAEEDGHEDSGKGQRGHSDVPAEEMLSDEYYEQDGEEQSDSMHARGFRRSTASNSCLQRKSTNVNRGVVHRKSRTLDDSEDDDGDADYEEDESDEDDPDDADFEPATSRRGANKDKDREGEDSDEADDSDEDIDVWDNDDSYLDKKAKGKQRGKFRRSVRPTRDRKACTASSRQRRVQASFEDEDDDSTAEDSDSESDEDFISLKKRRVHVRKNNVRSPAPTSSYRHSNEVRSSTRTVRKVSYVESDESEAADEGKKSQKEEIEEDDRDSIEKVLWHQPKGMAAEAQENNQSMEPVLMSHLFDSEPDWNNMEFLIKWKGQSHLHCQWKSFIMLQNLSGFKKVLNYTKRVTEEIRYRMRISREEIEINDVSKEMDIDIIKQNSQVERIISDRISKDNSGNVIPEYLVKWKGLSYAEVTWEKDIDIAFAQDAIDEYKAREAAMSVQGKMVVDLQRRKSKASLRKLDEQPEWLKCGKLRDYQLEGLNFLVNSWINDTNVVLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRSSREVCQQYEFYNENKAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFVQNYKNLSSFNENELANLHMELRPHILRRIIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHDYGGNSESSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENEGGQAHGLLSAFKVANFCNDEDDGSFWSRWIKADAVAQAENALAPRAARNIKSYAENDQFERSNKRKKKESELPERIPKRRKAEHSAHVTPMIDGASAQVRSWSNGNLSKRDALRFSRSVMKFGNESQINLIAAEVGGAVEAAPLKAQAELFNALIDGSREAVEVGSLDLKGPLLDFYGVPVKANELLIRVQELQLLAKRISRYEDPVAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGFGNWEMIRLDERLGLMKKIAPVELQHHETFLPRAPNLRDRTNALLEQELAVLGVKNAYSKVGKKTSKKDKEHLVDISLSRVREKKKNTGSYKVDVQMRKDKLQKPLKVEPIVKEEGEMSDDDEEVYEQFKEVKWLEWCQDVMVEEGKTLQRLQRLQRTSADLPKEKVLSKIRNYLQLLGRRIDHIVSEQEVEPYKQDRMTTRLWEYASTFSHLSGERLRQIYSKLKLEQNAAGVGPSLPNGSVSGPFSRNGNTNHFPRHMERQRELQNETAYRVTKPTSETDMSDAWKRRRRAENNGHGHFQGQPQPRRVTSNGIRPLDTNSMGILGAGPSDKRLAGEKHSRLNLVGVLQDKNTLREASS 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 35 50 - -
Vifa2g00754 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 527 591 IPR000953 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 190 209 - -
Vifa2g00754 1760 CDD CD1_tandem 412 492 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 266 283 - -
Vifa2g00754 1760 SMART helicmild6 966 1050 IPR001650 -
Vifa2g00754 1760 Coils Coil 1134 1154 - -
Vifa2g00754 1760 Gene3D - 851 1081 IPR027417 -
Vifa2g00754 1760 Pfam Domain of unknown function (DUF4208) 1533 1624 IPR025260 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 1695 1735 - -
Vifa2g00754 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 632 804 IPR014001 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 225 247 - -
Vifa2g00754 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1126 IPR027417 -
Vifa2g00754 1760 Gene3D - 611 850 IPR038718 -
Vifa2g00754 1760 CDD SF2_C_SNF 926 1061 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 1635 1654 - -
Vifa2g00754 1760 Gene3D - 529 581 - -
Vifa2g00754 1760 SUPERFAMILY Chromo domain-like 506 582 IPR016197 -
Vifa2g00754 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 940 1091 IPR001650 -
Vifa2g00754 1760 FunFam Chromo domain-containing protein 1 402 527 - -
Vifa2g00754 1760 SUPERFAMILY Chromo domain-like 410 494 IPR016197 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 307 328 - -
Vifa2g00754 1760 Pfam SNF2-related domain 640 908 IPR000330 GO:0005524|GO:0140658
Vifa2g00754 1760 SMART chromo_7 525 584 IPR000953 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 361 385 - -
Vifa2g00754 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 146 1667 - -
Vifa2g00754 1760 Coils Coil 1080 1100 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 248 265 - -
Vifa2g00754 1760 FunFam Photoperiod-independent early flowering 1 591 864 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 1699 1719 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 29 414 - -
Vifa2g00754 1760 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 329 343 - -
Vifa2g00754 1760 Pfam Chromo (CHRromatin Organisation MOdifier) domain 528 582 IPR023780 -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 86 123 - -
Vifa2g00754 1760 SMART DUF4208_2 1520 1625 IPR025260 -
Vifa2g00754 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 414 493 IPR000953 -
Vifa2g00754 1760 Gene3D - 1347 1462 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 386 414 - -
Vifa2g00754 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 841 IPR027417 -
Vifa2g00754 1760 CDD CD2_tandem 525 581 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 1211 1244 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 124 169 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 59 85 - -
Vifa2g00754 1760 FunFam protein CHROMATIN REMODELING 5 isoform X2 529 581 - -
Vifa2g00754 1760 MobiDBLite consensus disorder prediction 1633 1658 - -
Vifa2g00754 1760 Gene3D - 401 527 - -
Vifa2g00754 1760 SMART ultradead3 616 812 IPR014001 -
Vifa2g00754 1760 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 851 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00754 Vifa-Chr2 188643194 188662462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00754 603 1077 RAD5 or RAD16-like Gene Family AT1G02670 26.277 1.24e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g00754 SNF2_N 2.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00754 K11367 - gmx:100808039 2583.9