Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00746 ATGGAAGGATTAGCAACTGGGTCGAATGAAAGGAATGAACTTGTTCGAGTTAGACATGGTTCTGATTCTGGGTCTAAACCTGTAACGAATTTGAATGGTCAATTTTGTCAAATATGTGGTGATACTATTGGATTAACAGCCGCTGGCGGGGTCTTCGTTGCTTGCCACGAGTGTGCCTTCCCACTATGTCATCCTTGTTACGAATACGAAATAAAAAATGTGAGCCAATTATGTCCACAATGCAAGACTAGATACAAAACTCACAAAGACGGTCCTCAAGTGAAGGGAGATGACGATGAAGACGATGTTGATGGTCTACGGAATGAGGTCAAGTATGGTCCAGGAAATAATTCTAAGACGGGGTGGCAATGGGATGAAGACGCTGACCTCTCTTCGTCTTCTGGACATGATTCTCAATTACAAAATCCCCATCTCACTAATGGACAGCTGATGTCTGGTGAGATTGCATGTGCCACATCTGATACTCAATCTGCACAAACTACATCAGGTCCTTTGGGTCAATCCGGAAACGTTCATTCACGTCCCTATGCTGATCCAAAGCAACCAGGTCTCGAGAGTGATGAGGAGATCAGACGAGTACCAGATATGGGAGGTGAATCTGCGGGAACTTCAGCCTCTCATAAAGGCACTGGCTCAACTGCTGGTCCTGAACGTGCTCAAGGGACTGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCTGCTGACAAAGAAAGCAAACGGCTGAAGAGGCTGCTAAGGAACAGAGTTTCAGCTCAGCAAGCGAGGGAGAGGAAAAAGGCATACTTGAGTGATTTGGAAACAAGAGTCAATGACTTGGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCAACTTTGCAGAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACAACTGCGAGCAGGAGAGGAGGCAATAGTGGTACCAACAATGCTGAATGA 969 0.451 MEGLATGSNERNELVRVRHGSDSGSKPVTNLNGQFCQICGDTIGLTAAGGVFVACHECAFPLCHPCYEYEIKNVSQLCPQCKTRYKTHKDGPQVKGDDDEDDVDGLRNEVKYGPGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLTNGQLMSGEIACATSDTQSAQTTSGPLGQSGNVHSRPYADPKQPGLESDEEIRRVPDMGGESAGTSASHKGTGSTAGPERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGGNSGTNNAE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00746 322 Gene3D Single helix bin 265 306 - -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 159 176 - -
Vifa2g00746 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 244 307 IPR004827 GO:0003700|GO:0006355
Vifa2g00746 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 113 146 - -
Vifa2g00746 322 SUPERFAMILY Leucine zipper domain 246 304 IPR046347 GO:0003700|GO:0006355
Vifa2g00746 322 MobiDBLite consensus disorder prediction 210 226 - -
Vifa2g00746 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 249 264 IPR004827 GO:0003700|GO:0006355
Vifa2g00746 322 SMART brlzneu 242 306 IPR004827 GO:0003700|GO:0006355
Vifa2g00746 322 Pfam bZIP transcription factor 243 304 IPR004827 GO:0003700|GO:0006355
Vifa2g00746 322 MobiDBLite consensus disorder prediction 87 146 - -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 229 265 - -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 159 265 - -
Vifa2g00746 322 CDD mRING-HC-C4C4_CesA 34 84 - -
Vifa2g00746 322 FunFam Transcription factor HY5 265 306 - -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 188 202 - -
Vifa2g00746 322 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 160 319 IPR044280 GO:0000981|GO:0045944
Vifa2g00746 322 SUPERFAMILY RING/U-box 20 104 - -
Vifa2g00746 322 MobiDBLite consensus disorder prediction 1 23 - -
Vifa2g00746 322 Pfam Zinc-binding RING-finger 26 103 IPR027934 -
Vifa2g00746 322 Coils Coil 241 310 - -
Vifa2g00746 322 CDD bZIP_HY5-like 247 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00746 Vifa-Chr2 186761055 186763400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00746 3 189 Glycosyltransferase AT4G32410 57.979 3.70e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g00746 zf-UDP 1.3e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00746 K10999 - aprc:113855639 525.398