Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00741 ATGTCACGGTCCGATACTGTTATGATGACGACTACTACTACAACTACTTCGGATCTGAATAGAACTGGTACCGTTGAAAGAGACATTGAGCAGGCAATTACTGCTTTAAAGAAAGGGGCTTGTTTGCTTAAGTACGGAAGAAGGGGGAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGACGAATCTCTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAATTAATGTTTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCACGGCCTGCGAAGGAGTACCAGTCATTTTCACTTATCTACAATGACAGATCACTGGATCTGATTTGCAAGGACAAAGATGAGGCTGAGGTGTGGTTCAGTGGATTGAAAGCATTGATTTCACGGAGCCATCAGCGGAAGTGGAGATCAGAATCAAGAAGTGATGGTTTTCCATCTGAAATTAATAGTCCTCGAACATACACTAGAAGAGGTTCTCCCTTGCATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGAGAGTGGGGATCACCTCCACCTTCATAGCCCATATGAGAGCCCTCCTGAGAATGGTTTAGATAAAGCATTTGCTGATGCGACTTATTATCCTATTCCTCCAAAGAGTTTCTTCCCACCAGATTCGGCCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGCGTGCATGGTCACATGAAGACAATGCCTATGGATGCCTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCTTCTAGCCAAGGTTCTGCTCGTGACGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTTGGTGGTGGGGCTCGTCGAGTTGGGAGTTGTTTTGATGTCAAAATGGATTCTCTATTGCCGAAAGCCTTGGAATCAGCAGTAGTTCTAGATGTACAGAATATTGCTTGTGGTGGGCAACATGTGGCCTTAGTGACGAAACAGGGTGAAATTTTCTCTTGGGGAGAAGAATCAGGAGGCAGACTCGGGCATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATCGAATCTTTGAGTAATACAAATATCGAACTAGTTGCTTGTGGAGAGTATCATACTTGTGCTGTGACACTTTCTGGAGATCTTTATACATGGGGTGATGCCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGTCACTGGGTTCCAAGAAGAGTAAATGGTCCCTTGGAGGGTATACACGTTTCATCTATTTCTTGTGGTCCTTGGCATACTGCTATCGTAACCTCTTCTGGGAAGTTATTTACTTTTGGTGATGGTACATTTGGTGTTCTCGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCCTTGAAGGGTCTTCGAACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATCCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGAGATGGAGACAAAGGTAGACTTGGGCATGGTGACAAGGAATCCAAACTTGTTCCAACCTGTGTTGTAGCCCTTATTGAACCTAATTTTTGTCAAGTTGCTTGTGGGCATAGTATGACTGTTGCACTTTCTAGAGCAGGCCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAATCTGATGGTAAACTACCAACTCGCATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAGGTAGCCTGTGGTGCTTATCATGTTGCAGTTTTGACTTCAAGGACTGAAGTTTTTACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGGGATACTGATGATAGAAACTCCCCAACATTAGTGGAAGCTTTAAAAGACAAACAAGTTAAAAGTATTGCCTGTGGTACAAATTTTACTGCTTCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAGCGCCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCTTCAATGTCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAACTGTTTTAACAAAATAAAGAAAACTACAGAAGCTAACGGTTCATCTCAGTCTTCTATTAGCAGGAGAGGAAGTATTAATCAAGGGTCACTCGAGTCTATTGTTAAGGATGATAAATTGGATTCTAGATCTCAAAATCAATTTTCTAAGTTCGCATCAATGGAATCCTTGAAACAAGTAGACAGACGATCTTCAAAGAAAAATAAGAAAATGGAATTCAACAGTAGTCGGGTCTCGCCTGTTCCAAATGGAGGTTCTCAATGGGGAGCGATGCATATTTCTAAATCTTCTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGGGCAACATCCCCAATATCTAGGCGGCCTAGTCCACCACGGTCAACTACTCCAACCCCAACGCTGGGAGGACTGACAACCCCAAAGATAGTTGTGGATGATACAAAGAGGACTAACGATAGCCTCGGCCAGGAGGTTGTTAAATTGAGATCACAGGTGGAAAACTTGACTCGGAAATCACAGCTTCAAGAAGATGAGTTGGAAAAAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCCAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTTCTCAGCTGAAGGACATGGCTGAAAGGATGCCCATAGGAGCAGCTAGGAATGTCAGATCACCCTCTAACTCAACTCCTGGTTCCAATGACTTGAGCATTGCTTCCATCGATAGACTAAATACTCAAGCAACAAGCCCAGAATCAGACGTAAGTGGATCATATAGCCAGTTATTTTCAAATGGATCAAGCACCGTCACCGACCGTTCTGCTGGTCACTGTAAACATAGTCAATCAGATGCAGCTAGCAGAAATGGGAGCAAACCAAAAGAGAATGAGTCTCGTAATGAGAGCGAATGGGTTGAGCAAGACGAGCCTGGTGTATATATTACCCTCACATCCCTGGCAAGTGGTGCAATAGATCTTAAGAGGGTTCGGTTCAGTCGCAAACGGTTTAGTGAGAAACAAGCAGAACATTGGTGGGCTGAAAATCGAGTAAGAGTATATGAACAGTACAATGTGCGCATGATTGACAAGTCAACCATTGGTATTGGGAGTATGGACCTGGCTCATTGA 3339 0.4343 MSRSDTVMMTTTTTTTSDLNRTGTVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESLLIWFSGKEEKRLKLINVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRSESRSDGFPSEINSPRTYTRRGSPLHSPFGSNESLQKESGDHLHLHSPYESPPENGLDKAFADATYYPIPPKSFFPPDSASGSVHSVSSGGSDSVHGHMKTMPMDAFRVSLSSAVSSSSQGSARDDGDALGDVFIWGEGTGDGVLGGGARRVGSCFDVKMDSLLPKALESAVVLDVQNIACGGQHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDATYNYGLLGHGNQVSHWVPRRVNGPLEGIHVSSISCGPWHTAIVTSSGKLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNPSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALIEPNFCQVACGHSMTVALSRAGHVYTMGSCVYGQLGNPQSDGKLPTRIEGKLSKSFVEEVACGAYHVAVLTSRTEVFTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTASICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMSPNPNKPYRVCDNCFNKIKKTTEANGSSQSSISRRGSINQGSLESIVKDDKLDSRSQNQFSKFASMESLKQVDRRSSKKNKKMEFNSSRVSPVPNGGSQWGAMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDTKRTNDSLGQEVVKLRSQVENLTRKSQLQEDELEKTTKQLKEAIAIASEETAKCKAAKEVIKSLTSQLKDMAERMPIGAARNVRSPSNSTPGSNDLSIASIDRLNTQATSPESDVSGSYSQLFSNGSSTVTDRSAGHCKHSQSDAASRNGSKPKENESRNESEWVEQDEPGVYITLTSLASGAIDLKRVRFSRKRFSEKQAEHWWAENRVRVYEQYNVRMIDKSTIGIGSMDLAH 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 445 496 IPR000408 -
Vifa2g00741 1112 Pfam Pleckstrin homology domain 30 136 IPR001849 -
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 444 IPR000408 -
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 389 IPR000408 -
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 613 664 IPR000408 -
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 276 337 IPR000408 -
Vifa2g00741 1112 Coils Coil 931 951 - -
Vifa2g00741 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 483 493 IPR000408 -
Vifa2g00741 1112 Pfam Transcription factor BRX N-terminal domain 926 956 IPR027988 -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 983 1026 - -
Vifa2g00741 1112 Gene3D - 27 145 IPR011993 -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 1027 1043 - -
Vifa2g00741 1112 FunFam PH, RCC1 and FYVE domains-containing protein 1 499 670 - -
Vifa2g00741 1112 Pfam Unstructured region between BRX_N and BRX domain 966 1032 - -
Vifa2g00741 1112 FunFam PH, RCC1 and FYVE domains-containing protein 1 247 498 - -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 338 386 IPR000408 -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 561 609 IPR000408 -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 389 440 IPR000408 -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 444 493 IPR000408 -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 614 660 IPR000408 -
Vifa2g00741 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Vifa2g00741 1112 SMART fyve_4 663 732 IPR000306 GO:0046872
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Vifa2g00741 1112 Coils Coil 882 927 - -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 737 810 - -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 737 756 - -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 321 334 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 431 447 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 550 568 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 447 461 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 608 629 IPR000408 -
Vifa2g00741 1112 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Vifa2g00741 1112 CDD PH_PLC_plant-like 27 137 - -
Vifa2g00741 1112 SMART PH_update 35 139 IPR001849 -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 151 181 - -
Vifa2g00741 1112 FunFam Putative E3 ubiquitin-protein ligase HERC1 671 739 - -
Vifa2g00741 1112 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 147 199 - -
Vifa2g00741 1112 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 669 731 IPR017455 -
Vifa2g00741 1112 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Vifa2g00741 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Vifa2g00741 1112 CDD FYVE_like_SF 674 727 - -
Vifa2g00741 1112 Gene3D - 400 499 IPR009091 -
Vifa2g00741 1112 Gene3D - 224 399 IPR009091 -
Vifa2g00741 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 738 IPR013083 -
Vifa2g00741 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 72 947 - -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 983 1043 - -
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 780 797 - -
Vifa2g00741 1112 SUPERFAMILY RCC1/BLIP-II 275 666 IPR009091 -
Vifa2g00741 1112 Pfam FYVE zinc finger 665 731 IPR000306 GO:0046872
Vifa2g00741 1112 MobiDBLite consensus disorder prediction 844 870 - -
Vifa2g00741 1112 Gene3D - 505 676 IPR009091 -
Vifa2g00741 1112 SUPERFAMILY PH domain-like 28 136 - -
Vifa2g00741 1112 SUPERFAMILY FYVE/PHD zinc finger 665 739 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00741 Vifa-Chr2 184396797 184413057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00741 935 1103 Major Intrinsic Protein MIP AT1G31880 30.412 2.85e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00741 - - gmx:100791947 1878.6