Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g00736 | ATGTCTTCTTCACTCGTCAAGATCCAAGACCTACACCTCCTCCCCAAAGATCTCCACAATCTTTCAATCAGAGATCTGAGTGGAAAGGTGAGTGAAGAAGAAGAGAATCAGCCTGTAGGATTTGGTAAACATGGAGGAATATGCGCAATTTGCTTAGACGTGATAGTGCTACAAGAAACTGCGCTTGTAAAAGGTTGCGAGCATGCTTACTGTATAACATGTATCCTTCATTGGGCCACATACAGTAAGAAAGTTACCTGCCCTCAGTGCAAACATCCATTTGAGTTCCTCGCTGTTCATCGCACTCTTGATGGAAGTATTCAAGATTACATGTTCGATGAAAGTGTTTGCCTCCTACTTCGGGCCAAGTGGTTCAAGCCTTTATCTGTTGAAGATCGGGCTGTTGTTGAAGAAGATATCTATGCAGAGATAGAAGACTATTATTATCAGTATGAAGAAGCTGATGATGATCTAGACGACGATGAGGCTTACTATGGTGCTTCAGCAAATGTCCGTCTTGGCAACCGTAGATGGGGAGACAACGGTTTTGTAAGGGCTGGGCGTCAAGAAGCTCGGCCAGTCCATCGACCAAGCTTCCATGATTCAGGAGCGAGTTCATCGCGCGAGCCAAAGAAGAAAGAGCAAGAGTCTCCAAAAGTTATGACAGGAAGACGGGCAAAGAGGGCACTGAAAAGGGAAGCTGCTAATAAGGCAGCTGAAGTGAAGCACCAGAAGCATCTGGATAGGTTGGGTAGGAACTAG | 762 | 0.4554 | MSSSLVKIQDLHLLPKDLHNLSIRDLSGKVSEEEENQPVGFGKHGGICAICLDVIVLQETALVKGCEHAYCITCILHWATYSKKVTCPQCKHPFEFLAVHRTLDGSIQDYMFDESVCLLLRAKWFKPLSVEDRAVVEEDIYAEIEDYYYQYEEADDDLDDDEAYYGASANVRLGNRRWGDNGFVRAGRQEARPVHRPSFHDSGASSSREPKKKEQESPKVMTGRRAKRALKREAANKAAEVKHQKHLDRLGRN | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g00736 | 253 | ProSitePatterns | Zinc finger RING-type signature. | 66 | 75 | IPR017907 | - | |
Vifa2g00736 | 253 | SMART | ring_2 | 48 | 90 | IPR001841 | - | |
Vifa2g00736 | 253 | SUPERFAMILY | RING/U-box | 47 | 97 | - | - | |
Vifa2g00736 | 253 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 6 | 253 | - | - | |
Vifa2g00736 | 253 | MobiDBLite | consensus disorder prediction | 205 | 253 | - | - | |
Vifa2g00736 | 253 | ProSiteProfiles | Zinc finger RING-type profile. | 48 | 91 | IPR001841 | - | |
Vifa2g00736 | 253 | MobiDBLite | consensus disorder prediction | 189 | 253 | - | - | |
Vifa2g00736 | 253 | Pfam | Zinc finger, C3HC4 type (RING finger) | 48 | 90 | IPR018957 | GO:0046872 | |
Vifa2g00736 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 114 | IPR013083 | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g00736 | 3 | 252 | C3H Transcription Factor Family | AT5G19430 | 51.292 | 3.17e-79 | 237 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g00736 | - | - | gmx:100777135 | 323.939 |