Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00736 ATGTCTTCTTCACTCGTCAAGATCCAAGACCTACACCTCCTCCCCAAAGATCTCCACAATCTTTCAATCAGAGATCTGAGTGGAAAGGTGAGTGAAGAAGAAGAGAATCAGCCTGTAGGATTTGGTAAACATGGAGGAATATGCGCAATTTGCTTAGACGTGATAGTGCTACAAGAAACTGCGCTTGTAAAAGGTTGCGAGCATGCTTACTGTATAACATGTATCCTTCATTGGGCCACATACAGTAAGAAAGTTACCTGCCCTCAGTGCAAACATCCATTTGAGTTCCTCGCTGTTCATCGCACTCTTGATGGAAGTATTCAAGATTACATGTTCGATGAAAGTGTTTGCCTCCTACTTCGGGCCAAGTGGTTCAAGCCTTTATCTGTTGAAGATCGGGCTGTTGTTGAAGAAGATATCTATGCAGAGATAGAAGACTATTATTATCAGTATGAAGAAGCTGATGATGATCTAGACGACGATGAGGCTTACTATGGTGCTTCAGCAAATGTCCGTCTTGGCAACCGTAGATGGGGAGACAACGGTTTTGTAAGGGCTGGGCGTCAAGAAGCTCGGCCAGTCCATCGACCAAGCTTCCATGATTCAGGAGCGAGTTCATCGCGCGAGCCAAAGAAGAAAGAGCAAGAGTCTCCAAAAGTTATGACAGGAAGACGGGCAAAGAGGGCACTGAAAAGGGAAGCTGCTAATAAGGCAGCTGAAGTGAAGCACCAGAAGCATCTGGATAGGTTGGGTAGGAACTAG 762 0.4554 MSSSLVKIQDLHLLPKDLHNLSIRDLSGKVSEEEENQPVGFGKHGGICAICLDVIVLQETALVKGCEHAYCITCILHWATYSKKVTCPQCKHPFEFLAVHRTLDGSIQDYMFDESVCLLLRAKWFKPLSVEDRAVVEEDIYAEIEDYYYQYEEADDDLDDDEAYYGASANVRLGNRRWGDNGFVRAGRQEARPVHRPSFHDSGASSSREPKKKEQESPKVMTGRRAKRALKREAANKAAEVKHQKHLDRLGRN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00736 253 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Vifa2g00736 253 SMART ring_2 48 90 IPR001841 -
Vifa2g00736 253 SUPERFAMILY RING/U-box 47 97 - -
Vifa2g00736 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 253 - -
Vifa2g00736 253 MobiDBLite consensus disorder prediction 205 253 - -
Vifa2g00736 253 ProSiteProfiles Zinc finger RING-type profile. 48 91 IPR001841 -
Vifa2g00736 253 MobiDBLite consensus disorder prediction 189 253 - -
Vifa2g00736 253 Pfam Zinc finger, C3HC4 type (RING finger) 48 90 IPR018957 GO:0046872
Vifa2g00736 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 114 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00736 3 252 C3H Transcription Factor Family AT5G19430 51.292 3.17e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00736 - - gmx:100777135 323.939