Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00734 ATGGCTGAACATAACATGCAAATTTCACTCTCAAGCTCCTCAGACGAGTCCTCAGACCAAGAAACACCATTCACCACCGCCATGAACCCAACAACCGACACAGGTGGTTCATCTCACCAACAAACACCAACTGATTCACCACAACCCTACAGAAAGCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCTCTTGTAATAACACAAGACAATGAACAAGCCATGAAACCTGCAATCATTGAAGTAGCTGCTGGTACTGATGTTCTTGAAGCTGTTATCCAGTTTGCTGTTCGTCTTGGTTCATGTATCACCATTCTTAGCGGTTCTGGTACTATTGCTGTTGCTACACTCCATTACCCTGTTTGTCAATCTCCTGCTTTCACTCTTCATGGACCTTTTTCTTTGTTGACTTTGACTGGTACTTTTTTCTTCCCACCATCTCCACCACCACCTCCTCCTCCTCCTCTTCCTATTTCTCTCCCTATTGCTTCATCTTCTTCACCAAACCCTAACCCTAACCAGTTAGAACCATCTCCACCATCTTCTACTTTTGGTATCACTCTTGCTGGTATGCAGGGACAAATCTTTGGTGGCATAATTGGTGGTAAAGTTATAGCTGGTGGTGATGGTGTTAAGATTGTTGCTTCTTTGTTTAAAAATCCTGAACTTCATAGGGCTACTGGTATTCTCTTGGAACCGGATGATGATGATGTTGTCAATGATGATGATAACGGCGGTGATGGTGATCCTGGTGCTGCTGCTGACAATGTGTCTGGTTTCAATATTCCTAATCCAATGACTATGCATCCTCCACTACATTCTGATCCAAACTTCATGCCATGGAATCACCCTTCTCACCCTCGTCCTCCTAATTTCTGA 888 0.4414 MAEHNMQISLSSSSDESSDQETPFTTAMNPTTDTGGSSHQQTPTDSPQPYRKPRGRPPGSKNKPKPPLVITQDNEQAMKPAIIEVAAGTDVLEAVIQFAVRLGSCITILSGSGTIAVATLHYPVCQSPAFTLHGPFSLLTLTGTFFFPPSPPPPPPPPLPISLPIASSSSPNPNPNQLEPSPPSSTFGITLAGMQGQIFGGIIGGKVIAGGDGVKIVASLFKNPELHRATGILLEPDDDDVVNDDDNGGDGDPGAAADNVSGFNIPNPMTMHPPLHSDPNFMPWNHPSHPRPPNF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00734 295 CDD DUF296 82 145 IPR005175 -
Vifa2g00734 295 Gene3D - 79 239 - -
Vifa2g00734 295 MobiDBLite consensus disorder prediction 1 68 - -
Vifa2g00734 295 ProSiteProfiles PPC domain profile profile. 75 248 IPR005175 -
Vifa2g00734 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 228 - -
Vifa2g00734 295 MobiDBLite consensus disorder prediction 1 48 - -
Vifa2g00734 295 MobiDBLite consensus disorder prediction 234 295 - -
Vifa2g00734 295 MobiDBLite consensus disorder prediction 50 64 - -
Vifa2g00734 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 219 IPR005175 -
Vifa2g00734 295 MobiDBLite consensus disorder prediction 149 164 - -
Vifa2g00734 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 240 IPR014476 GO:0003680
Vifa2g00734 295 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00734 Vifa-Chr2 180843667 180844554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00734 51 228 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 42.077 1.00e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00734 - - tpra:123915288 271.166