Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00729 ATGATCATTATTCGTACCATGCTTGGTATTACAAAGCTACTAGTATTATTTTTTTTTAAATTTTCTTCTGCAACCGATACCATTACACAATCACAACCACTTTCTGATGGCAGCACCTTGGTATCTAAGGATGGAACATTTGAATTGGGTTTCTTCAATCCTGGTACTTCCACAAACCGCTATGTTGGAATTTGGTACAAAAATATCCCAGTAAGAAAAGTTGTTTGGGTTGCAAACCGTGATAATCCAATCAAAGACAGTTCAAGCAAGTTGATCATAAGTAATGAGGGAAACCTGGTACTTCTAAATCGGAATCAATCAATTATATGGTCAACAAACACACGAGAAACAACAAGAACAACATCAAAGATTCCAATTGCGCAACTATTAGACAATGGAAACTTAGTACTCAAAAAAGACGGTGAAGAGGATTTTCTATGGCAGAGCTTTGATTATCCGAGTGATACAATATTAGCAGGAATGAAAGCTGGATGGGACAAGAAAAAGGGTCTAAATAGGATTCTGGTTGCATGGAAAAACTGGGAAGATCCATCTTCAAGTGATTTTACTTCAGCTGTTGTACAATCTCCTAGTCCTGAGAGTTTTATTTTCAAAGGCTCGACAAAATATTTCAGGACTGGACCATGGATTGATCGTCGAGCTAGTGGAGTAATTGGGTTGGCAGAAAATCCACTTTATGATTATGAATTCGTCAACAATGAAGATGAGGTATATTATATGTTCACACTCAAAAATACTTCTGTGGTTTCTATACTTGTATTGAACCAAACAAGTTTGGTTCGTCAACGGTTGATTTGGATTTCAGAAACGAAATCATGGAATGTTTACCAACACCTACCACAGGATAGTTGTGATGAATATAATGTTTGTGGCGATAATGGTTTATGTGCGCTTAATGAATCACCTATGTGTCAGTGTTTAGATGGGTTTAAGCCGAAATCGGCTCAACAATGGAATGCAATGAATTGGAGACAAGGTTGTGTACGTAATGGTAATTGGAGCTGTGGGGTGAAAGACAGAGATGGGTTTAAAAGAATTGCTGGTGTGAAATTGCCAGACACTGACCATTCTTGGATTGATGAGAAAATGACACTTAAAGATTGTAAAGCTAAATGTTTGGAAAATTGTTCATGTAGTGCTTACTCTAGCTTAGACTCAAGTGGAGCTGGTAGTGGTTGTTCTATTTGGTTTGGTGCACTTGCTGATCTTAGAATTTCACAAACTGGACAAGATTTATATGTTCGAATGGATGTTTCTGATATTGGTGATAAAAATGGACATACTAAAACGATAGTATTGGCTGTTTCAATTACAGTTTCAGTAGTTCTTGTGGTGTTATTGGCATTCACCTACATTTATATTAAAAAGGCGAAATATAAAGATGAAATAGAGAAAGCCACGAGGTCAGAAGAGAATGATGAAGACACACATGAAGGTTTTGAGCTTCCTATCTTTGATAAAGCCACATTACTCAAGGCCACACATAACTTCTCTTTTAACAACAAACTCGGTGAAGGTGGTTTTGGACCGGTATACAAGGGTACATTGCTCGATGGGCGACAAATTGCTGTTAAAAGGCTTTCAAAGAGTTCAGGACAAGGAATAAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTAAAGGTTCTTGGGTGTTGTATCGAAAGAGAAGAGAAAATGTTGATCTATGAATATATGTCCAACAAAAGTCTTGATTCATTTCTTTTTGATTTCGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAGGGAATAACAAATAGAATAGTTGGCACATACGGTTATATGGCACCTGAATATGCAATTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGAGTATTATTATTAGAAATTATGAGTGGAAAGAAAAATAGAGCACTTAACTACCAAGAGCAGGATCATAATCTTATTGGATATGCGTGGAGATTGTGGAAAGAGAGCACTCCACTCGAATTGATCGATGATTCTTTAAGGGACTCTTGTATTGAATCTGAAGCATTACGCTGCATTCAAATTGGCCTATTATGCGTACAATACCATCCCGATGATAGACCCAGCATGTCATCTGTCGTTGTGATGTTGAGTAGCGTAAACACTTTGTCTGAACCAAAGGAACCCGGTTTCTTGATTAAAAAAAATTCAATTGATGGAGAACAAACATCTTCTTCGGCAAATGAAGTAACCATCTCATTATTAGACGCTAGATAA 2283 0.3671 MIIIRTMLGITKLLVLFFFKFSSATDTITQSQPLSDGSTLVSKDGTFELGFFNPGTSTNRYVGIWYKNIPVRKVVWVANRDNPIKDSSSKLIISNEGNLVLLNRNQSIIWSTNTRETTRTTSKIPIAQLLDNGNLVLKKDGEEDFLWQSFDYPSDTILAGMKAGWDKKKGLNRILVAWKNWEDPSSSDFTSAVVQSPSPESFIFKGSTKYFRTGPWIDRRASGVIGLAENPLYDYEFVNNEDEVYYMFTLKNTSVVSILVLNQTSLVRQRLIWISETKSWNVYQHLPQDSCDEYNVCGDNGLCALNESPMCQCLDGFKPKSAQQWNAMNWRQGCVRNGNWSCGVKDRDGFKRIAGVKLPDTDHSWIDEKMTLKDCKAKCLENCSCSAYSSLDSSGAGSGCSIWFGALADLRISQTGQDLYVRMDVSDIGDKNGHTKTIVLAVSITVSVVLVVLLAFTYIYIKKAKYKDEIEKATRSEENDEDTHEGFELPIFDKATLLKATHNFSFNNKLGEGGFGPVYKGTLLDGRQIAVKRLSKSSGQGIKEFKNEVILCAKLQHRNLVKVLGCCIEREEKMLIYEYMSNKSLDSFLFDFGMARMCGGDQIEGITNRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIMSGKKNRALNYQEQDHNLIGYAWRLWKESTPLELIDDSLRDSCIESEALRCIQIGLLCVQYHPDDRPSMSSVVVMLSSVNTLSEPKEPGFLIKKNSIDGEQTSSSANEVTISLLDAR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00729 760 Gene3D Transferase(Phosphotransferase) domain 1 576 725 - -
Vifa2g00729 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Vifa2g00729 760 Gene3D Hepatocyte Growth Factor 341 425 - -
Vifa2g00729 760 Gene3D - 20 150 IPR036426 -
Vifa2g00729 760 CDD B_lectin 31 153 IPR001480 -
Vifa2g00729 760 SMART blect_4 31 153 IPR001480 -
Vifa2g00729 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 469 579 - -
Vifa2g00729 760 PIRSF SRK 591 760 IPR024171 GO:0004674
Vifa2g00729 760 PIRSF SRK 1 591 IPR024171 GO:0004674
Vifa2g00729 760 ProSiteProfiles Protein kinase domain profile. 504 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00729 760 SUPERFAMILY Protein kinase-like (PK-like) 488 728 IPR011009 -
Vifa2g00729 760 Coils Coil 463 483 - -
Vifa2g00729 760 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Vifa2g00729 760 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Vifa2g00729 760 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 710 - -
Vifa2g00729 760 Pfam D-mannose binding lectin 74 179 IPR001480 -
Vifa2g00729 760 CDD PAN_AP_plant 341 422 - -
Vifa2g00729 760 ProSiteProfiles Bulb-type lectin domain profile. 25 150 IPR001480 -
Vifa2g00729 760 Gene3D Phosphorylase Kinase; domain 1 477 575 - -
Vifa2g00729 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 599 724 - -
Vifa2g00729 760 Pfam PAN-like domain 342 410 IPR003609 -
Vifa2g00729 760 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Vifa2g00729 760 SMART ntp_6 345 423 IPR003609 -
Vifa2g00729 760 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Vifa2g00729 760 Pfam Protein tyrosine and serine/threonine kinase 591 718 IPR001245 GO:0004672|GO:0006468
Vifa2g00729 760 Pfam Protein tyrosine and serine/threonine kinase 505 589 IPR001245 GO:0004672|GO:0006468
Vifa2g00729 760 Pfam Domain of unknown function (DUF3403) 724 760 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00729 Vifa-Chr2 179572848 179575875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00729 430 758 Receptor kinase-like Gene Family AT4G23150 41.795 2.40e-84 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00729 PK_Tyr_Ser-Thr 3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00729 - - tpra:123915292 1125.15