Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00728 ATGATCATTATTCGTACCATGCTTGGTATTACAAAGCTACTAGTATTATTTTTTTTTAAATTTTCTTCTGCAACCGATACCATTACACAATCACAACCACTTTCTGATGGCAGCACCTTGGTATCTAAGGATGGAACATTTGAATTGGGTTTCTTCAATCCTGGTACTTCCACAAACCGCTATGTTGGAATTTGGTACAAAAATATCCCAGTAAGAAAAGTTGTTTGGGTTGCAAACCGTGATAATCCAATCAAAGACAGTTCAAGCAAGTTGATCATAAGTAATGAGGGAAACCTGGTACTTCTAAATCGGAATCAATCAATTATATGGTCAACAAACACACGAGAAACAACAAGAACAACATCAAAGATTCCAATTGCGCAACTATTAGACAATGGAAACTTAGTACTCAAAAAAGACGGTGAAGAGGATTTTCTATGGCAGAGCTTTGATTATCCGAGTGATACAATATTAGCAGGAATGAAAGCTGGATGGGACAAGAAAAAGGGTCTAAATAGGATTCTGGTTGCATGGAAAAACTGGGAAGATCCATCTTCAAGTGATTTTACTTCAGCTGTTGTACAATCTCCTAGTCCTGAGAGTTTTATTTTCAAAGGCTCGACAAAATATTTCAGGACTGGACCATGGATTGATCGTCGAGCTAGTGGAGTAATTGGGTTGGCAGAAAATCCACTTTATGATTATGAATTCGTCAACAATGAAGATGAGGTATATTATATGTTCACACTCAAAAATACTTCTGTGGTTTCTATACTTGTATTGAACCAAACAAGTTTGGTTCGTCAACGGTTGATTTGGATTTCAGAAACGAAATCATGGAATGTTTACCAACACCTACCACAGGATAGTTGTGATGAATATAATGTTTGTGGCGATAATGGTTTATGTGCGCTTAATGAATCACCTATGTGTCAGTGTTTAGATGGGTTTAAGCCGAAATCGGCTCAACAATGGAATGCAATGAATTGGAGACAAGGTTGTGTACGTAATGGTAATTGGAGCTGTGGGGTGAAAGACAGAGATGGGTTTAAAAGAATTGCTGGTGTGAAATTGCCAGACACTGACCATTCTTGGATTGATGAGAAAATGACACTTAAAGATTGTAAAGCTAAATGTTTGGAAAATTGTTCATGTAGTGCTTACTCTAGCTTAGACTCAAGTGGAGCTGGTAGTGGTTGTTCTATTTGGTTTGGTGCACTTGCTGATCTTAGAATTTCACAAACTGGACAAGATTTATATGTTCGAATGGATGTTTCTGATATTGGTGATAAAAATGGACATACTAAAACGATAGTATTGGCTGTTTCAATTACAGTTTCAGTAGTTCTTGTGGTGTTATTGGCATTCACCTACATTTATATTAAAAAGGCGAAATATAAAGATGAAATAGAGAAAGCCACGAGGTCAGAAGAGAATGATGAAGACACACATGAAGGTTTTGAGCTTCCTATCTTTGATAAAGCCACATTACTCAAGGCCACACATAACTTCTCTTTTAACAACAAACTCGGTGAAGGTGGTTTTGGACCGGTATACAAGGGTACATTGCTCGATGGGCGACAAATTGCTGTTAAAAGGCTTTCAAAGAGTTCAGGACAAGGAATAAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTAAAGGTTCTTGGGTGTTGTATCGAAAGAGAAGAGAAAATGTTGATCTATGAATATATGTCCAACAAAAGTCTTGATTCATTTCTTTTTGATCCATCTCAAAGCAAATTGTTAGATTGGTCTACACGATTTAACATTCTATTTGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCAAGATTAAGGATCATACACAGAGATTTGAAAGTGAGTAATATTTTACTAGATGATGATATGAATCCAAAAATTTCAGATTTCGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAGGGAATAACAAATAGAATAGTTGGCACATACGGTTATATGGCACCTGAATATGCAATTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGAGTATTATTATTAGAAATTATGAGTGGAAAGAAAAATAGAGCACTTAACTACCAAGAGCAGGATCATAATCTTATTGGATATGCGTGGAGATTGTGGAAAGAGAGCACTCCACTCGAATTGATCGATGATTCTTTAAGGGACTCTTGTATTGAATCTGAAGCATTACGCTGCATTCAAATTGGCCTATTATGCGTACAATACCATCCCGATGATAGACCCAGCATGTCATCTGTCGTTGTGATGTTGAGTAGCGTAAACACTTTGTCTGAACCAAAGGAACCCGGTTTCTTGATTAAAAAAAATTCAATTGATGGAGAACAAACATCTTCTTCGGCAAATGAAGTAACCATCTCATTATTAGACGCTAGATAA 2451 0.3631 MIIIRTMLGITKLLVLFFFKFSSATDTITQSQPLSDGSTLVSKDGTFELGFFNPGTSTNRYVGIWYKNIPVRKVVWVANRDNPIKDSSSKLIISNEGNLVLLNRNQSIIWSTNTRETTRTTSKIPIAQLLDNGNLVLKKDGEEDFLWQSFDYPSDTILAGMKAGWDKKKGLNRILVAWKNWEDPSSSDFTSAVVQSPSPESFIFKGSTKYFRTGPWIDRRASGVIGLAENPLYDYEFVNNEDEVYYMFTLKNTSVVSILVLNQTSLVRQRLIWISETKSWNVYQHLPQDSCDEYNVCGDNGLCALNESPMCQCLDGFKPKSAQQWNAMNWRQGCVRNGNWSCGVKDRDGFKRIAGVKLPDTDHSWIDEKMTLKDCKAKCLENCSCSAYSSLDSSGAGSGCSIWFGALADLRISQTGQDLYVRMDVSDIGDKNGHTKTIVLAVSITVSVVLVVLLAFTYIYIKKAKYKDEIEKATRSEENDEDTHEGFELPIFDKATLLKATHNFSFNNKLGEGGFGPVYKGTLLDGRQIAVKRLSKSSGQGIKEFKNEVILCAKLQHRNLVKVLGCCIEREEKMLIYEYMSNKSLDSFLFDPSQSKLLDWSTRFNILFGIARGLLYLHQDSRLRIIHRDLKVSNILLDDDMNPKISDFGMARMCGGDQIEGITNRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIMSGKKNRALNYQEQDHNLIGYAWRLWKESTPLELIDDSLRDSCIESEALRCIQIGLLCVQYHPDDRPSMSSVVVMLSSVNTLSEPKEPGFLIKKNSIDGEQTSSSANEVTISLLDAR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00728 816 Pfam Protein tyrosine and serine/threonine kinase 505 774 IPR001245 GO:0004672|GO:0006468
Vifa2g00728 816 Gene3D Transferase(Phosphotransferase) domain 1 580 789 - -
Vifa2g00728 816 CDD STKc_IRAK 510 766 - -
Vifa2g00728 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Vifa2g00728 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Vifa2g00728 816 Coils Coil 463 483 - -
Vifa2g00728 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Vifa2g00728 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vifa2g00728 816 ProSiteProfiles Bulb-type lectin domain profile. 25 150 IPR001480 -
Vifa2g00728 816 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Vifa2g00728 816 SMART ntp_6 345 423 IPR003609 -
Vifa2g00728 816 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00728 816 ProSiteProfiles Protein kinase domain profile. 504 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00728 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 469 579 - -
Vifa2g00728 816 Pfam D-mannose binding lectin 74 179 IPR001480 -
Vifa2g00728 816 Gene3D - 20 150 IPR036426 -
Vifa2g00728 816 CDD B_lectin 31 153 IPR001480 -
Vifa2g00728 816 SMART blect_4 31 153 IPR001480 -
Vifa2g00728 816 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Vifa2g00728 816 SUPERFAMILY Protein kinase-like (PK-like) 488 784 IPR011009 -
Vifa2g00728 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Vifa2g00728 816 CDD PAN_AP_plant 341 422 - -
Vifa2g00728 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 766 - -
Vifa2g00728 816 Pfam Domain of unknown function (DUF3403) 780 816 IPR021820 GO:0004674
Vifa2g00728 816 Gene3D Hepatocyte Growth Factor 341 425 - -
Vifa2g00728 816 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Vifa2g00728 816 Pfam PAN-like domain 342 410 IPR003609 -
Vifa2g00728 816 Gene3D Phosphorylase Kinase; domain 1 477 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00728 Vifa-Chr2 179572848 179575875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00728 430 814 Receptor kinase-like Gene Family AT4G23150 52.308 1.14e-128 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00728 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00728 - - tpra:123915292 1259.59