Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00726 ATGGCATCTTGCTTGAACCCACAAATCAATGAAGATGACTCTCCCATACTCTTCTCAACTTCTAATTCCCCTCAAGACTCCATTAGTCCTTCTTCTTCTTCTTTCTACCATTCACCTTCACCACAAACTTCATTCAAACTATCTATCAAAAACCTCACCTATACTTTACACTCTTCAAAAACCAACATTCCGCTTTCATTTTATCACCTCACTCAAAAACCACATCCTATAAACATACTCAAATCTGTCTCTTTTGTTGCCAAAACTTCGGAGATTGTCGCGGTTGTTGGTCCTAGTGGCACAGGGAAATCAACCCTTCTCCGAATAATCGCGGGGAGGGTAAAAGATAAAGACTTTGATTCAAAAACTATCTCAATCAATGATCACCCTATGAGTATTCCTTCTCAGTTAAGAAAAATATGCGGCTTTGTGTCACAAGAAGACAACTTGCTACCACTTCTAACTGTGAAAGAAACATTGCTTTTCAGTGCAAAGTTTAGGCTAAAACAAATAACACCAAAAGAAAGAGAATTGAGAGTAGAAAACCTAATGCAAGAGTTAGGACTTTTTCATGTTGCTGATAGTTTTGTTGGTGATGAAGAAAATAGAGGTGTATCTGGTGGTGAAAGAAAAAGGGTATCAATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACATCAGGACTTGATAGCACCTCAGCACTTCATGTGATTGAGCTTCTTTCATCAATGGTTAAATCAAAGCAAAGGATAGTGATTCTTTCAATTCATCAACCTAGTTATAGAATATTGCAGTATATTTCCAAGTTCTTGATTCTTTCTCATGGTTCAGTTGTTCACAATGGTAGTTTGGAGTCACTAGAGGAAACAATATCTAATTTGGGATTTCAAATTCCATTACAACTTAATCCTTTAGAATTTTCCATGGAAATTATACAAAGTTTAGAAGATTCTAGAAGTTCTATCATTGACGACGAAAACGAAACTTCTTTTCCAAGTTTAGTTTGGCAAGAGGAAGAAAAGGATGGAAGTGGAATTTTCCAAACACAAAATGAAGGTGGAAGTTATGGAAATCTTTGCTATGTAAACTTGATGGAGATATTGTTTCTGTGTTCAAGATTCTGGAAGATTATTTATAGAACAAAGCAACTATTTTTAGCAAGAACAATGCAAGCATTAATTGGTGGATTTGGTTTAGGAAGTGTTTACATAAAGGTAAGAAAAGATGAAGATGGAATTGCAGAAAGGTTAGGTCTATTTGCATTTAGTCTCAGTTTTCTCTTGTCTTCAACAGTTGAAGCACTTCCAATATACCTTCAAGAAAGAACTGTTCTAATGAAAGAAGCATCAAGAGGAGCTTATAGAATATCCTCTTACATGATAGCCAACACTGTTGTTTTTCTTCCTTTTCTGTTTGTGGTTTCTATACTTTTTGCTGTTCCTGTTTATTGGATTGTAGGACTCAATCCTTCATTCAGTTCTTTCACTTTTTTCACTTTTATGGTTTGGCTCATTGTGCTGATGGCAAGTTCTTTAGTACTCTTTTTAAGTTCTGTGTCTCCTGATTTCATTTCAGGAAACTCACTTATCTGCACTGTTCTTGGAGCCTTCTTTCTATTCTCTGGATATTTTATTCCAAAAGAGAGCATTCCAAAATATTGGCTTTTTATGTACTATGTGTCACTTTATAGGTACCCTTTGGATGCACTTCTAACAAATGAGTATTGGAATGTTGGAAATGAGTGTTTTTCACAACAAGGGTCTTCTTCATCAAAGTGTTTGGTTACTGGATTTGATGTGTTGAAGAGTAGAGGAATTGAAAAGGATAATAGGTGGATGAATGTAGGAATAATGGTTGGATTCTTTGTGTTCTATCGTTTGCTTTGTTGGATCATACTTGCTAGAAAGGCCTCCAAGACCACAATATAA 1947 0.3549 MASCLNPQINEDDSPILFSTSNSPQDSISPSSSSFYHSPSPQTSFKLSIKNLTYTLHSSKTNIPLSFYHLTQKPHPINILKSVSFVAKTSEIVAVVGPSGTGKSTLLRIIAGRVKDKDFDSKTISINDHPMSIPSQLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKQITPKERELRVENLMQELGLFHVADSFVGDEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEETISNLGFQIPLQLNPLEFSMEIIQSLEDSRSSIIDDENETSFPSLVWQEEEKDGSGIFQTQNEGGSYGNLCYVNLMEILFLCSRFWKIIYRTKQLFLARTMQALIGGFGLGSVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKEASRGAYRISSYMIANTVVFLPFLFVVSILFAVPVYWIVGLNPSFSSFTFFTFMVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVGNECFSQQGSSSSKCLVTGFDVLKSRGIEKDNRWMNVGIMVGFFVFYRLLCWIILARKASKTTI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00726 648 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524|GO:0016887
Vifa2g00726 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 306 IPR003439 GO:0005524
Vifa2g00726 648 Gene3D - 65 307 IPR027417 -
Vifa2g00726 648 MobiDBLite consensus disorder prediction 1 36 - -
Vifa2g00726 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 633 - -
Vifa2g00726 648 Pfam ABC-2 type transporter 263 327 IPR043926 GO:0140359
Vifa2g00726 648 Pfam ABC transporter 80 233 IPR003439 GO:0005524
Vifa2g00726 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 297 IPR027417 -
Vifa2g00726 648 FunFam ABC transporter G family member 23 71 304 - -
Vifa2g00726 648 Pfam CDR ABC transporter 589 639 IPR010929 GO:0005524|GO:0016020|GO:0042626|GO:0055085
Vifa2g00726 648 SMART AAA_5 89 291 IPR003593 GO:0016887
Vifa2g00726 648 Pfam ABC-2 type transporter 373 581 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00726 Vifa-Chr2 177970588 177972534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00726 77 293 Calmodulin-binding Proteins AT2G36910 30.088 7.54e-13 70.1