Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00718 ATGGGAAATTGTTGCTCCCAAGGCGGAGATACCCCGGCCGATAACACTGCCGCCGCGGACAAGGGAGAAACCAACCAAGAAAACACCAATAATAATAATGATAACGAGCCATCCACTAACCCTATCACTACGCCACCTCCAACCTCCAAACCACCAGCCACCAACACACCAGCTCCAGCAAAACCCTCCAAACCGGCTGCTATGGGCCCCGTTTTACAACGACCAATGGAAGACGTGAGAGCTACCTACACCATAGGGAAAGAGCTAGGGAGAGGACAATTTGGGGTGACACATTTGTGTACAAATAAGGTGACAAAAGAACAATTTGCATGCAAAACAATTGCCAAGAGAAAACTAGTGAATAAAGAGGATATAGAAGATGTTAGAAGGGAGGTGCAAATAATGCATCATCTAACAGGTCAACCAAACATTGTGGAATTAAAAGGTGCATATGAAGACAAACAATCTGTTCATTTGGTTATGGAATTATGCGCCGGTGGTGAACTATTTGATCGAATCATCGCAAAAGGACTCTATACAGAACGTGCTGCAGCTTCATTGTTGAGGACCATTGTCCAAATTATTCATACTTTGCATTCAATGGGTGTCATTCATAGAGATCTTAAACCTGAAAATTTCCTCTTGTTGAGTAAGGACGAAAATGCACCTCTTAAAGCCACCGATTTTGGTCTCTCCGTCTTTTTTAAACAAGGAGATATGTTCAAAGATATTGTTGGGAGTGCATATTACATAGCACCAGAGGTGTTGAAGAGGAGATATGGACCAGAAGTTGACATATGGAGTATTGGTGTTATGCTATACATTCTTCTTAGTGGTGTCCCTCCTTTTTGGGCAGAATCTGAACATGGAATATTCAATGCCATATTAAGAGGACACATTGACTTTCAAAGCGATCCATGGCCTTCAATTTCACCCGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAAAGACTTACAGCACAAGAAGTTTTGGATCATCCTTGGACCAAGGAGGATGGAGAAGCACCAGATAAACCTATTGACAATGCTGTATTGGGCAGACTCAAGCAGTTCAGAGCAATGAACCAATTTAAGAAAGTTGCTCTAAGGGTTATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAAGAAATGTTCAAGGGGATGGACACTGACAACAGTGGAACCATTACCGTTGAAGAACTCAAACTAGGCCTTCAACAGCAAGGAACTAAGCTTTCAGAACAAGAAGTTCAACAATTAATGGAAGCTGCTGATGCTGATGGTAATGGAACGATAGATTACGACGAGTTCATCACAGCAACAATGCATATGAACAGAATGAATAGAGAAGAACATCTTTACACTGCATTCCAATATTTTGATAAAGATAACAGCGGGTTCATTACTACTGAAGAACTAGATCAAGCACTCCGTGAATACAATATGCATGATGGAAGAGACATCAAGGATATTCTTCAAGAAGTTGATGGAGATAATGATGGACGTATAAACTATGATGAGTTTGCGGCAATGATGAGAAAAGGAAATCCAGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCTGTTACACAATAG 1626 0.4096 MGNCCSQGGDTPADNTAAADKGETNQENTNNNNDNEPSTNPITTPPPTSKPPATNTPAPAKPSKPAAMGPVLQRPMEDVRATYTIGKELGRGQFGVTHLCTNKVTKEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGLYTERAAASLLRTIVQIIHTLHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKQGDMFKDIVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFQSDPWPSISPAAKDLVRKMLNSDPKQRLTAQEVLDHPWTKEDGEAPDKPIDNAVLGRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITVEELKLGLQQQGTKLSEQEVQQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELDQALREYNMHDGRDIKDILQEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSVTQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00718 541 FunFam Calcium-dependent protein kinase 1 85 168 - -
Vifa2g00718 541 MobiDBLite consensus disorder prediction 40 59 - -
Vifa2g00718 541 Gene3D - 349 527 - -
Vifa2g00718 541 SMART efh_1 424 452 IPR002048 GO:0005509
Vifa2g00718 541 SMART efh_1 495 523 IPR002048 GO:0005509
Vifa2g00718 541 SMART efh_1 388 416 IPR002048 GO:0005509
Vifa2g00718 541 SMART efh_1 460 488 IPR002048 GO:0005509
Vifa2g00718 541 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Vifa2g00718 541 FunFam calcium-dependent protein kinase 1 169 348 - -
Vifa2g00718 541 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Vifa2g00718 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 516 - -
Vifa2g00718 541 CDD STKc_CAMK 83 340 - -
Vifa2g00718 541 SUPERFAMILY Protein kinase-like (PK-like) 68 366 IPR011009 -
Vifa2g00718 541 SMART serkin_6 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00718 541 Gene3D Phosphorylase Kinase; domain 1 84 168 - -
Vifa2g00718 541 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Vifa2g00718 541 SUPERFAMILY EF-hand 381 521 IPR011992 -
Vifa2g00718 541 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Vifa2g00718 541 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Vifa2g00718 541 ProSiteProfiles EF-hand calcium-binding domain profile. 495 526 IPR002048 GO:0005509
Vifa2g00718 541 MobiDBLite consensus disorder prediction 1 39 - -
Vifa2g00718 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vifa2g00718 541 Gene3D Transferase(Phosphotransferase) domain 1 169 348 - -
Vifa2g00718 541 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Vifa2g00718 541 ProSitePatterns Protein kinases ATP-binding region signature. 89 116 IPR017441 GO:0005524
Vifa2g00718 541 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Vifa2g00718 541 ProSiteProfiles Protein kinase domain profile. 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00718 541 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Vifa2g00718 541 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Vifa2g00718 541 Pfam Protein kinase domain 83 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00718 541 MobiDBLite consensus disorder prediction 1 75 - -
Vifa2g00718 541 FunFam Calcium-dependent protein kinase 1 349 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00718 Vifa-Chr2 175164680 175166920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00718 1 534 EF-hand Containing Proteins AT5G12180 78.652 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g00718 Pkinase 2.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00718 K13412 - gmx:100781355 909.057