Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00709 ATGTTTGAGAGAGGAGCAAGGAAAGGAAGAAGAAAGCACGCTACTGTAAATGAAAATTGTGAACATGAATTTAAAATATTTTTCAATCCATTCCCATTCCATTCCCGTTCCATTCTTCTCTCGCCCTCTCATGATTCCGAAGCAAGTTTGAGAAATCAAGCTTCGCGTAACAGCGACTCCAGTCGTTTATCGCTTACTCACTTCCTCGATCGCAAACTGCATAACTCTTCAACAGTCCCTCAAACCGTTTCGGGGAAATTGACGCCTTTTCAATCACCGGCCAATGAGCAAGATGGAAGCGTCAAACTAACTGAAGAAGAGAGAAAGTCTGCAACTGCTGATGAGAAGTTGATTTTGGGAATGAAAAGGAAAAATCCATTTGAAGATCCCTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCCGGTGCCGGGACCAAAGAATATGTTCATGTCCGTGTACAACAGCGTAACGGAAGGAAAAGCTTAACAACTGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGCTGTAATGGCTGGCATTGTAAAGAAGGAGAATATCAAGCTTCATGGTTGAATTCGAAAGCTATAATTCCAAAAACATCAATTTCGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTTCTTTCTTAGTGCAACAGGCCATGAGGGCATTCCGTGCTCAGAATTTAGAAAGTGCCAAATCAAGACTCAGCCTATGTGCAGAAGACGTTCGTAGTCAGATTGAAAAAAGGAATTTATCTGTCAAGACGAAAAACGTGTCAATAGCCCAATTTAAGAGTCTTTGTGCTTATTGGAGTAAGGAAACTATACAAGCAATCAGTGAAAATAACACTAGAAATAGAGCTCAACTAAAGTGGATGCATCGAATGGGTCCCAAAAACTTTGCTTTGACTCGTGAAAAATGTGAAAAGGAAAAAAGAGAGCCCACTCAATCAGAAATGTTTGTTGAAACTCGAAAAGGAAATAAAGGAAAGGAACTGGATGTAGAAACTGGAAAAGTAATTGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGAACGACAAAGATGAAGAATTTATGGAGGATGACATATCTAATGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAAACAAACTTGAATGA 1299 0.3926 MFERGARKGRRKHATVNENCEHEFKIFFNPFPFHSRSILLSPSHDSEASLRNQASRNSDSSRLSLTHFLDRKLHNSSTVPQTVSGKLTPFQSPANEQDGSVKLTEEERKSATADEKLILGMKRKNPFEDPFAEANAEDSGAGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGWHCKEGEYQASWLNSKAIIPKTSISIALLKVMLGSKGSFLVQQAMRAFRAQNLESAKSRLSLCAEDVRSQIEKRNLSVKTKNVSIAQFKSLCAYWSKETIQAISENNTRNRAQLKWMHRMGPKNFALTREKCEKEKREPTQSEMFVETRKGNKGKELDVETGKVIDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQENDKDEEFMEDDISNEFQEDDLDALLLENKLE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00709 432 ProSiteProfiles Translation initiation factor SUI1 family profile. 149 189 IPR001950 GO:0003743|GO:0006413
Vifa2g00709 432 MobiDBLite consensus disorder prediction 76 99 - -
Vifa2g00709 432 Pfam Translation initiation factor SUI1 146 194 IPR001950 GO:0003743|GO:0006413
Vifa2g00709 432 SUPERFAMILY eIF1-like 127 198 IPR036877 GO:0003743|GO:0006413
Vifa2g00709 432 Pfam Plant transposase (Ptta/En/Spm family) 276 365 IPR004252 -
Vifa2g00709 432 MobiDBLite consensus disorder prediction 364 405 - -
Vifa2g00709 432 MobiDBLite consensus disorder prediction 76 113 - -
Vifa2g00709 432 Gene3D - 104 201 - -
Vifa2g00709 432 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 129 231 - -
Vifa2g00709 432 MobiDBLite consensus disorder prediction 368 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00709 Vifa-Chr2 170953907 170962877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00709 129 196 Eukaryotic Initiation Factors Gene Family AT1G54290 83.824 1.41e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00709 K03113 - mtr:112419792 136.346