Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00708 ATGGTGAGATCTGCAAGTTGTGAAAAAAATAGTGTGGTCAAAAGAGGTGCATGGATGACAGAAGACGATGGATCTGGTAGTTGGAATTCTGTCCCCAAAAAAACAGGTATAAAGAGGTGTGGAAAAAGTTGCAGACTTAGGTGGAGTAACAACGTGGTTGATGATAAGTTATTCACATCAGAAGAAGAAGATCTTATAGTTAAGCTTCATTCTGCCATAGGTAGTAGGTGGTCTATCATAGCACAACAACTTCCTGGAAGAACAGACAATGATGTAAAGAACAACTGGAACACAAAGCTGAAAAAGAAACTGTCTCAAATGGGGATAGATCCTGTTACACACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAATATAGGTGCTAAACAAGACTTCAGGAATGTCAATCCCAAAATGGATCTTTCTCACTTCCAAACCATTCCAATAACAAAAATAAAGAATGAGGCCAATAATGTTGCACCATTTAGTTGGAATGATTTTCTCCTACAGGAAGCTTTTGCACCACCACTTACTAATAACCAAGATCAAACATTACTTTCAAAGGATATTTTGGTGACCAAACTACAATTAGAGAAAAACAAAGAGGTTGTATCGTCATCATCTTCATCGTCATCCTCAGACATTTCATTTGTAGAAGCAATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTCCCCGAACTTTTGGAGGAACCATTCCATTACTGA 732 0.377 MVRSASCEKNSVVKRGAWMTEDDGSGSWNSVPKKTGIKRCGKSCRLRWSNNVVDDKLFTSEEEDLIVKLHSAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGAKQDFRNVNPKMDLSHFQTIPITKIKNEANNVAPFSWNDFLLQEAFAPPLTNNQDQTLLSKDILVTKLQLEKNKEVVSSSSSSSSSDISFVEAILDQENEMFLSFPELLEEPFHY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00708 243 Pfam Myb-like DNA-binding domain 58 98 IPR001005 -
Vifa2g00708 243 SMART sant 54 102 IPR001005 -
Vifa2g00708 243 Gene3D - 57 118 - -
Vifa2g00708 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 104 IPR017930 -
Vifa2g00708 243 ProSiteProfiles Myb-like domain profile. 58 100 IPR001005 -
Vifa2g00708 243 PANTHER F14D16.11-RELATED 153 243 - -
Vifa2g00708 243 CDD SANT 58 100 IPR001005 -
Vifa2g00708 243 SUPERFAMILY Homeodomain-like 14 96 IPR009057 -
Vifa2g00708 243 FunFam Os07g0634900 protein 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00708 Vifa-Chr2 170616361 170617370 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00708 1 123 MYB Transcription Factor Family AT5G56110 58.088 2.32e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g00708 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00708 K09422 - gmx:100795381 201.83