Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00700 ATGGCCAACGCGTTCTCTCTTGTAGCACAACAATACAAAGCTCTACTGAAAAAAAACGTACTCCTCTCATGGCGAAGCAAACGCTCAATCCTCCTCCAACTACTCTCTCCAATCATCTTCATCTTCCTAATCTTCGCCGTCGACAAAGCAATCAAAGCACAAACCTCCACAACTTCATCTTACAAATCCGTAACAAACCCTGCCTCTCTACCTTCCCCGCCAATCCCACCTTGCGAGCGTAAATTCTTCGTTAAGCTTCCTTGTTACGATTTCGTATGGAGTGGCGATAACAATCCAAAGTTTCACACAATTGTGAATAGAATTATTAGTAATAACCCTGGTAGACCTATTCCGATTTCTAAAGTGAAGTCGTTTAGGGATAAGGGGAAGGTTGATAAGTGGCTTTTTGATAATCCTATGCAATGTCCTGGCGCGATTCATTTTCGTGAAGAGAATGCTAGTGTTATTGGTTATGGGATTCAGACTAATTCTACTAGTGTTCAGAAACGGGGAAGATTTGAAGATCCCACTTTTTCTTTTCAATTGCCTCTTCAGCTTGCTGCTGAACGTGAAATCGCCAGATTCCTTATTGGAGACCCGAGCTTCAAGTGGAATGTGTTTTTGAAGGAATTTGCGCACCCAGCAATGAGTCCTTTCTCTGCTGTTAGAACAATAGGTCCGGCGTTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTCACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTGTGATGGGGCTTTACGACTCTGCGTACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTACAGTCCTATCATCTATTCTCGTAGTTCTCTCTGGCATGACGTTTCAGTTTGATTTCTTCTTGAAAAACAATTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAACTCAACATGACTGGGCTGGCCTTCATGTTATCTGCTTTCATTCGTAAATCATCTTCTGCAACAACAGTCGGCTTCTCCATATTTATTGTCGGCTTTGTGACTCAGCTTGTGGTACAAGCAGGATTTCCTTATACTGATAGCATCTCTGTTACTTTCCAAAATTTATGGTCTTTGTTTCCGCCTAATCCTTTTGCTCAAGGCCTGAGTATACTTTCAGATGCAGTTTCAACCCCTGAAGATAATGGTCTTAGCTGGAGTAAACGGGGAGAATGTGCCGATTATGACGTTTGTGTGATCACAATTAATGATATTTATAAATGGCTTCTGGCCACATTCTTTCTGTGGTTCGTTCTGGCCTTGTACTTTGACAATATAATCCCGAATGCAATGGGTGTGAGGAAATCCGTGTTATACTTTCTAAATCCTCATTATTGGACGGGAAACGGAGGACAAAAAGTGAAAGAGGGCGGGGTTTGTAGTTGCTTAATTTCAGCCCATCATGAAGATAATAGTACAGCAGATGATGAAGATGTCATTGAGGAGGAAAATGCTGTGAAGTTGCAACAAACACAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGATACATGGCATTAAAAAGACTTATCCTGGTACATATAACATCGGTTGCTGCTTTAAATGTAAAAAAAGTGCACCTTATCACGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGATCAGTTGTTTTGTCTTTTAGGACCGAATGGAGCTGGAAAAACTACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACATTCAATCCGAAGTTCCACTTGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTTGCTAGTATTAAAGGCCTTTCCACAGCTTCTATAGAATCAATTACTCAGACATCACTGGCAGAGGTGAGACTCATGGATGCAGCCAGAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGCGACCCTAAATTAGTCATTTTGGATGAACCAACCACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCGAAAAGAGGGCGTGCCATTGTTCTTACAACACATTCTATGGAAGAAGCTGATATTCTAAGTGATCGCATAGGAATCATGGCAAAGGGAAAGCTCCGATGCATTGGCACCTCAATTAGATTGAAGTCACGCTTTGGCACTGGTTTTATTGCTAATATTAGCTTCTATGGAAGCAATAATGAAAACAGTCCTGTAAATGGTGATGCAGTATCAACAAGACATCATGAGGCTGTGAAGCAATTCTTCAAGAACCGATTGGATGTAGTACCAAAAGAGGAAAACAACAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGACACTCCTGACAGATTTTTTTTCAGAGCTTCAAGATAGAGAACAAGAATTTGGCATATCTGACATCCAGCTTGGTCTAACTACTCTTGAAGAAGTTTTCTTGAATATCGCAAAGCAAGCAGAGCTGGAAAGTGCTACAGCTGAAGGGAGCCTAGTGACTTTGACCTTGACATCTGGAGAGTCTGTGGAGATTCCAATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTTCTGAATACCCTACAGGTTTTATGGTAGAAGTATACTGGGAGCAAGATGACACTGGTGCCCTTTGTGTCGCCGGCCACTCACAGAAAGCTCCTATTCCTCAAAATATCCAACCACCTTCATCTGCTACTGCAAGACAACGCCGGTCAGGGTCAGTTCATGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGACAATTTCCAATGA 2880 0.417 MANAFSLVAQQYKALLKKNVLLSWRSKRSILLQLLSPIIFIFLIFAVDKAIKAQTSTTSSYKSVTNPASLPSPPIPPCERKFFVKLPCYDFVWSGDNNPKFHTIVNRIISNNPGRPIPISKVKSFRDKGKVDKWLFDNPMQCPGAIHFREENASVIGYGIQTNSTSVQKRGRFEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFAHPAMSPFSAVRTIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWLSWLTWETVVTVLSSILVVLSGMTFQFDFFLKNNFAVLFFLFFLFELNMTGLAFMLSAFIRKSSSATTVGFSIFIVGFVTQLVVQAGFPYTDSISVTFQNLWSLFPPNPFAQGLSILSDAVSTPEDNGLSWSKRGECADYDVCVITINDIYKWLLATFFLWFVLALYFDNIIPNAMGVRKSVLYFLNPHYWTGNGGQKVKEGGVCSCLISAHHEDNSTADDEDVIEEENAVKLQQTQGVVDANVAVQIHGIKKTYPGTYNIGCCFKCKKSAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSIRSSTCMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGLSTASIESITQTSLAEVRLMDAARVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGSNNENSPVNGDAVSTRHHEAVKQFFKNRLDVVPKEENNNFLTYVIPHERETLLTDFFSELQDREQEFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESVEIPIGARFVGIPGTESSEYPTGFMVEVYWEQDDTGALCVAGHSQKAPIPQNIQPPSSATARQRRSGSVHGVVIDPSQVSSDNFQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00700 959 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 489 856 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vifa2g00700 959 Pfam ABC-2 family transporter protein 27 435 IPR013525 GO:0016020|GO:0140359
Vifa2g00700 959 Pfam ABC transporter 545 689 IPR003439 GO:0005524
Vifa2g00700 959 MobiDBLite consensus disorder prediction 921 959 - -
Vifa2g00700 959 SMART AAA_5 553 737 IPR003593 GO:0016887
Vifa2g00700 959 Gene3D - 514 758 IPR027417 -
Vifa2g00700 959 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 514 760 IPR003439 GO:0005524
Vifa2g00700 959 MobiDBLite consensus disorder prediction 921 939 - -
Vifa2g00700 959 ProSitePatterns ABC transporters family signature. 662 676 IPR017871 GO:0005524|GO:0016887
Vifa2g00700 959 FunFam ABC transporter A family member 2 504 768 - -
Vifa2g00700 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 742 IPR027417 -
Vifa2g00700 959 CDD ABC_subfamily_A 514 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00700 Vifa-Chr2 168369377 168376795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00700 557 779 Calmodulin-binding Proteins AT2G36910 23.810 2.01e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00700 - - gmx:100786538 1539.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00700 2 168369377 168376795 Vifa2g00700 2 168369377 168376795 ECH