Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00697 ATGGATTACTACAACATACTGAAAGTGAGTCGAAGCGCAACCGACATTGATGTGAAGAAATCATACAAAAAGCTTGCTATGATATGGCACCCTGACAAAAACCCTGCTAACAGAGACGAAGCTGAGTCCAAATTCAAGCTGATTTCTGAAGCCTGCGATGTTTTAACCGATCCAGACAAGCGTAGAATCTACGATAATCACGGCGAGGCCGCGCTTAAGTCTGGCGTCGTCCCTCCACCACCCCCCAAACATTCGCATTATCCTTATGCATCTTCGTCCTCGTCTTCACGCCTGAATCGTCAGAGCAGTACCGCCTATCATTATAATCCTCGCAGTCCGCATGATATTTATACTGAGATCTTCGGTCACGATGATATAGAAACTGGTGCTGCTGTGCGGTTTGGTCGGAATCCTAAGAAGAAGAAAGCTCCTCCTGTCGAGCGTCCCTTGCTTTGCAGCCTGGAAGATCTGTATCAAGGAGTTGAGAAGAAGTTGAAGATTACAAGAACTGTAACCGATCATCATGGGAAGAGTCGTACTGAGGAGGAGATTGTGACTATTAACATAAAACCTGGCTGGAAGAAGGGGACAAAGGTTACCTTCATTGAAAAGGGTGACCAAGGGCCTGGCGTCATCCCAGCAGATATCATTTTTTTAATTGAGGAGAAACCACATGCACGTTATATAAGGAATGGCAATGATCTGATAATTAACCAAATGATGACTCTGGTCGACGCCCTTACAAATAAAATATTGGAAATCCCTACCTTGGATGGGAGGCGACTCATGGTCCGGTTGTCAGGTATAGTCACACCTGGCTATGAGCACGTAGTACCTAACGAAGGAATGCCATTATCCAAAGAACCTGGAAGGAAGGGAAATTTAAAAATTAAGATTATTGGCATCAAGTATCCCTCGAGTCTAACTCCTCGGCAAAAATCTGATCTGAGGGGTGTCTTGAGTTAA 966 0.4482 MDYYNILKVSRSATDIDVKKSYKKLAMIWHPDKNPANRDEAESKFKLISEACDVLTDPDKRRIYDNHGEAALKSGVVPPPPPKHSHYPYASSSSSSRLNRQSSTAYHYNPRSPHDIYTEIFGHDDIETGAAVRFGRNPKKKKAPPVERPLLCSLEDLYQGVEKKLKITRTVTDHHGKSRTEEEIVTINIKPGWKKGTKVTFIEKGDQGPGVIPADIIFLIEEKPHARYIRNGNDLIINQMMTLVDALTNKILEIPTLDGRRLMVRLSGIVTPGYEHVVPNEGMPLSKEPGRKGNLKIKIIGIKYPSSLTPRQKSDLRGVLS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00697 321 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Vifa2g00697 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 228 314 IPR008971 GO:0006457|GO:0051082
Vifa2g00697 321 Gene3D - 225 305 - -
Vifa2g00697 321 MobiDBLite consensus disorder prediction 71 110 - -
Vifa2g00697 321 Gene3D DnaJ domain 1 131 IPR036869 -
Vifa2g00697 321 FunFam DnaJ subfamily B member 13 225 306 - -
Vifa2g00697 321 Gene3D - 143 224 - -
Vifa2g00697 321 SMART dnaj_3 1 60 IPR001623 -
Vifa2g00697 321 SUPERFAMILY Chaperone J-domain 1 78 IPR036869 -
Vifa2g00697 321 MobiDBLite consensus disorder prediction 87 109 - -
Vifa2g00697 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 146 225 IPR008971 GO:0006457|GO:0051082
Vifa2g00697 321 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 320 - -
Vifa2g00697 321 Pfam DnaJ C terminal domain 147 299 IPR002939 -
Vifa2g00697 321 CDD DnaJ 2 57 IPR001623 -
Vifa2g00697 321 Pfam DnaJ domain 2 65 IPR001623 -
Vifa2g00697 321 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vifa2g00697 321 PRINTS DnaJ domain signature 40 60 IPR001623 -
Vifa2g00697 321 PRINTS DnaJ domain signature 60 79 IPR001623 -
Vifa2g00697 321 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vifa2g00697 321 FunFam Dnaj homolog subfamily b member 141 223 - -
Vifa2g00697 321 CDD DnaJ_C 144 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00697 Vifa-Chr2 164846113 164850014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00697 2 65 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.765 1.86e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00697 K09510 - gmx:100781572 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00697 2 164846113 164850014 Vifa2g00697 2 164846113 164850014 ECH