Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00688 ATGTCTCTCTACCAAGCTCCTGGATTCCGATTCCACCCCACCGATGAAGAGATCGTTTGTTTCTACCTGAAGCGAAAGCTCACCGGAAATCTACCTTTCCGTTTCGACCATCTTGCGGTGATTGACATCTACAAGTTCGAACCGTGGGACCTTCCCAGTTTATCGAAGCTGAAGAACAAGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGTAATAGTTTGAGGACGAATCGTACTACTGACAGGGGGTACTGGAAGACTACGGGAAAGGATCGCGTTATCAAGAACGGGCAGGACACTGTTGGAATGAAGAAGACCCTTGTTTATCACTTAGGACGGGCCCCACATGGTGATCGCTCCAATTGGGTCATGCATGAGTATAGGATGATTGATGAAGAATTGGCCAAAGCTGGAGTGCAGAAGGATGCTTATGTGCTGTGTAGGATCTTCGAGAAGAGTGGTCCGGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCCTTTGTTGAGGCAGAATGGGAGAATATTATTGATGGACGACAGGTGTATCCCTTGACGGCTGTTGATAGTGAGCATTCAACAGATAAAGTGCCTGCTCATACTGATGATGATTATTTTGAAACCAATGACCTTGATCAGGAGCTTGATACTTGTGTTACATTTGGAAGTGCTGACTTGCCATCGAACTTCTGTTATGGGGAGTGTAGTAGCCATTCTCAAGCATTTATTAATGATCATAAACAATTTGAAGCTGCTCTTGGTATTTACAATAGTCAGATTGATCAGCCTAATAATATGGCCGATCTATATGGTGTGGATATCAATTCAGTGCAAGATGGATACAATGAATATGTGGATACCAATGATGTTAAGAATATTGACGGGGCTATTACCACCGAGATTGATCCTTCTGTTGCTGCAATCTTAGATGAGTACCTTGCATGCCCTGATGAAGATATTTCCAAATATATTTGCTTTGATTCTCCTTTGAATGTAGAGAGTGAAAGCCCCATTGCCAACTATGGACAGTCTTTCATTGAGCAGAATGTGGAGGGAGAAACCAATGGTAGTACTTTGGCAAACCAACATGTTGATGCACAGTCTAGTAGTGAAATAGTTTTACCAAAGGAGGATCTTAAGGCGTCAAATTGGGTCTCTGGAGATGCAAATGCTTTTGTAATGCAAGCCAATAATTTGTTGGCCCGCATACCTGCTCCACCTGTATTTGCATCAGAGTTTCCTGCTAAGGAGTTTGCTATTGGAATGCATCCTGCAACCGTGTCTTCCAGTTCAGCACATATAACTGCAGGTATGAGTATGATCAGCATTACGGATATTACTTTTGGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTCACACCATTATGTCTTCTGGGTTTCCCCAAACTGATGTTAACTCTGCAACTCTGGTGCCTACTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATTCTATCCCTGAGTTTCAAGATCGGAAGCTTCATGTATACTGTTAAATGA 1587 0.4335 MSLYQAPGFRFHPTDEEIVCFYLKRKLTGNLPFRFDHLAVIDIYKFEPWDLPSLSKLKNKDLEWYFFTVLDKKYGNSLRTNRTTDRGYWKTTGKDRVIKNGQDTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDEELAKAGVQKDAYVLCRIFEKSGPGPKNGEKYGAPFVEAEWENIIDGRQVYPLTAVDSEHSTDKVPAHTDDDYFETNDLDQELDTCVTFGSADLPSNFCYGECSSHSQAFINDHKQFEAALGIYNSQIDQPNNMADLYGVDINSVQDGYNEYVDTNDVKNIDGAITTEIDPSVAAILDEYLACPDEDISKYICFDSPLNVESESPIANYGQSFIEQNVEGETNGSTLANQHVDAQSSSEIVLPKEDLKASNWVSGDANAFVMQANNLLARIPAPPVFASEFPAKEFAIGMHPATVSSSSAHITAGMSMISITDITFGGNAMDWMVGKNGGFHTIMSSGFPQTDVNSATLVPTSGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTVK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00688 528 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Vifa2g00688 528 FunFam Nac domain-containing protein 86 14 159 - -
Vifa2g00688 528 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
Vifa2g00688 528 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vifa2g00688 528 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Vifa2g00688 528 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00688 Vifa-Chr2 160242663 160244960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00688 351 520 NAC Transcription Factor Family AT5G04410 32.164 1.21e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g00688 NAM 5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00688 - - mtr:25484826 742.651