Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00687 ATGTCTCTCTACCAAGCTCCTGGATTCCGATTCCACCCCACCGATGAAGAGATCGTTTGTTTCTACCTGAAGCGAAAGCTCACCGGAAATCTACCTTTCCGTTTCGACCATCTTGCGGTGATTGACATCTACAAGTTCGAACCGTGGGACCTTCCCAGTTTATCGAAGCTGAAGAACAAGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGTAATAGTTTGAGGACGAATCGTACTACTGACAGGGGGTACTGGAAGACTACGGGAAAGGATCGCGTTATCAAGAACGGGCAGGACACTGTTGGAATGAAGAAGACCCTTGTTTATCACTTAGGACGGGCCCCACATGGTGATCGCTCCAATTGGGTCATGCATGAGTATAGGATGATTGATGAAGAATTGGCCAAAGCTGGAGTGCAGGATGCTTATGTGCTGTGTAGGATCTTCGAGAAGAGTGGTCCGGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCCTTTGTTGAGGCAGAATGGGAGAATATTATTGATGGACGACAGGTGTATCCCTTGACGGCTGTTGATAGTGAGCATTCAACAGATAAAGTGCCTGCTCATACTGATGATGATTATTTTGAAACCAATGACCTTGATCAGGAGCTTGATACTTGTGTTACATTTGGAAGTGCTGACTTGCCATCGAACTTCTGTTATGGGGAGTGTAGTAGCCATTCTCAAGCATTTATTAATGATCATAAACAATTTGAAGCTGCTCTTGGTATTTACAATAGTCAGATTGATCAGCCTAATAATATGGCCGATCTATATGGTGTGGATATCAATTCAGTGCAAGATGGATACAATGAATATGTGGATACCAATGATGTTAAGAATATTGACGGGGCTATTACCACCGAGATTGATCCTTCTGTTGCTGCAATCTTAGATGAGTACCTTGCATGCCCTGATGAAGATATTTCCAAATATATTTGCTTTGATTCTCCTTTGAATGTAGAGAGTGAAAGCCCCATTGCCAACTATGGACAGTCTTTCATTGAGCAGAATGTGGAGGGAGAAACCAATGGTAGTACTTTGGCAAACCAACATGTTGATGCACAGTCTAGTAGTGAAATAGTTTTACCAAAGGAGGATCTTAAGGCGTCAAATTGGGTCTCTGGAGATGCAAATGCTTTTGTAATGCAAGCCAATAATTTGTTGGCCCGCATACCTGCTCCACCTGTATTTGCATCAGAGTTTCCTGCTAAGGAGTTTGCTATTGGAATGCATCCTGCAACCGTGTCTTCCAGTTCAGCACATATAACTGCAGGTATGAGTATGATCAGCATTACGGATATTACTTTTGGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTCACACCATTATGTCTTCTGGGTTTCCCCAAACTGATGTTAACTCTGCAACTCTGGTGCCTACTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATTCTATCCCTGAGTTTCAAGATCGGAAGCTTCATGTATACTGTTAAATGA 1584 0.4337 MSLYQAPGFRFHPTDEEIVCFYLKRKLTGNLPFRFDHLAVIDIYKFEPWDLPSLSKLKNKDLEWYFFTVLDKKYGNSLRTNRTTDRGYWKTTGKDRVIKNGQDTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDEELAKAGVQDAYVLCRIFEKSGPGPKNGEKYGAPFVEAEWENIIDGRQVYPLTAVDSEHSTDKVPAHTDDDYFETNDLDQELDTCVTFGSADLPSNFCYGECSSHSQAFINDHKQFEAALGIYNSQIDQPNNMADLYGVDINSVQDGYNEYVDTNDVKNIDGAITTEIDPSVAAILDEYLACPDEDISKYICFDSPLNVESESPIANYGQSFIEQNVEGETNGSTLANQHVDAQSSSEIVLPKEDLKASNWVSGDANAFVMQANNLLARIPAPPVFASEFPAKEFAIGMHPATVSSSSAHITAGMSMISITDITFGGNAMDWMVGKNGGFHTIMSSGFPQTDVNSATLVPTSGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTVK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00687 527 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
Vifa2g00687 527 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Vifa2g00687 527 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vifa2g00687 527 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 238 - -
Vifa2g00687 527 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00687 Vifa-Chr2 160242663 160244960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00687 350 519 NAC Transcription Factor Family AT5G04410 32.164 1.28e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g00687 NAM 5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00687 - - mtr:25484826 747.273