Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00670 ATGACCATTGAAACAAAGCATGTGGTGGTGATACAGGATGCATCTAAACTAATTTTTAAAGTATTTTCTTGGGTTATAAATGGCTTATCTCTCAAGGCAGGAGATATGGTCACCTTATTTGCAATCTTGCATGAGGTTTACAATCCTATGGGTTATAAAACCAAGATGGACAACAATGGATTGGTTGGAGTAAACCAGCGAATCATTGACGGAGAACTTGCAAGGAAGAAGGAAGAGTATTTGAACCATGAGGAGCTTGCAAAGATTGCCGAATTGTATGACTCAAATGAGGTTACATTTAAGATACAGTTGTATGCAGGATCTTCACCAAAAGATTTTGCTATAGAAGGCGCCATAAATCTAAAGGCAACTTGGGTGATACTTGACAGGCAAATGAAGAAAGATGAAGAGTTTTTCATGCAGAAGCTTTCATGTGGAATATCTAGAATACTGGGTAAAAATCACATAGAACGCATAAGAGGACCTATAGATGTCGCAGTGGAAATACAATGCAACAGTCATGAAACATACCCTGAAAGTTTACCAGAAAGTCCAGGCGAAGATGTTTCCAACGGTCCAATCAATGTTGAAGAGGCGAGCCAGATAAATTTTAGGCCCGATAAAGATGAGGGGTGCTCAACATTCATTCCTAGCATGGATGTAACTGATATAAGCAGTAACAAAATCATAAACAAAATAGGAGATAAGCAATGCCAACAGGGTGAAGAACATATTGAAAAAATGGCTTATGAGGATGATATGGGCACAACACTTGTGACTAACAATGATCAAGCAAAAGATCTTCGTATGAGCCAGGATCAAGGAAAAAATGGCTCAAGGTGTTCTATATGCTCTATCTGCAAAACTAGAAGACCTAATATTGAATGGCAAAAGGAATTTACTTATGAAGAAGTGGAAGCAGCCACAGATGGATTTTCATTGAAGAACTGTCTCCCTGAAAGTGGAAATCCATTCTCCACTTTCAAAGGCAAGCTAGAGGGAGAGCTGAATATAGTTGTTAAGCAGCATGAAATAACAAACATTCAAGTAAGGGAAAAAATGATATCAGAAGTTCAAACCATCGTCAAAGCTAGACATAACAATGTGGTTATGCTATTGGGTTCATCTACAAAAGATCGTTTCATGTTGATTGTATACGAGTATGCATGCAACGGTTCACTTGACATGTATCTATCAAGGGAAAACTGCAGAAAATTGGCCTGGAGTGAAAGGCTAAGAGTGGCAATAGGCCTCTCCAGAGGTCTAAAGTACCTACATGACAATAACATTATTCATGGAAATATAAAACCGAGCAACATTCTTCTAACACATGACTTCAAACCACTGCTTGGAGATTTTGACCTTGGGAAAAAACTCGAACCGAAGAAGTCCTTCAATAACAAAAGCATAGGGAATTCTGAATACACGGCACCAGAATATCAGGAGAAAGGAAAACTATCAACTAAAACAGATGTATACTCGTTTGGTGTGGTTATTTTAGAGTTGATTACAGGACGCAATGCCACGGATAAAATATCAGGAGAAAAAAGACTTGTTGGATGGGCAAAGCCTCTTCTAGGAGGAAAGAAGTATTCAGAGTTGGTGGATCCTATAATAAGCAACACATATGAAGAAGACCAACTTCGCTGGTTGGTTAAAGTTACAGCACAATGTCTCAAAAAGAAGCCTAAGGAAAGGTTATCCATGAACATGGTTGTTTCTGCATTACAAGGCATTGCAGATAGCGAACAATGCAATATTACAGAAGAATTAACTTTAGTTACATCAGATTCTAGAATTGGGTCTGATATTGATGGTTCACAAGTTACATTACATGGAATAACAGACAGAAAACAGTGCAACATGACAGAGGACATTCCTCAAGTTGTATCAAATTCAAGAGACATAGATCTCCTGAGTCCGAAAGAGGAGCAGATAGAAAGAATCTCCTTTGATGAGGAAAGTTGGTTAAGAATAAAAGTTGAAAACAATCAATTTTACACGATAGCCCATGAAAGTTCTGATATATTGAGCCAGATTGATGAGCACGTGCAGAGCCTGCCAAAAGATTTGGACTTAGGAAACATGATAATAAATCAACATATGATGGATCAGACAGTAGTCGCTGAGATGAGTGATTTTGAACTAAATTTGAAGAGCAACCACAATGAGAACGATGTTCCAGCACAGAAAATTAGTAATAACCGCATGATTGGTCATGATCAAGAAGATGAGACGAGCTTGGTTCAAATGAAAAGAGGCTTACAACCTGTACCTATTAGTGGAATAATAGTTCAAAAAAAACTTCAGACTAGCTTTACTGAGAGTTCGCATGATGGACATCAAGAAGAAATCATTTTAGAGAAATCAAAATCCTCCGCATGCTCTATTTGCAAAAGTAAACGACCAAAAATTGTACGGATGAAAGACTTTACTTGTGACGAACTCGTAGAAGCAACTAAAGGATTTTCAGTTGAGAACTCTCTGTCAGAAAGTGAAGATGGACCTACATTCAAAGGGCTTCTTCTAGAGAGTAAGGTGAAAATAGTTGTTAAGAAACATCAAATGACTAGGTCGCAGGAAGAGAAGACATTCAAGTCAGAAGTTCAGTTGTTCACCAATGTTAGACACAAAAATGTGGTCATGCTGTTAGGATTGTGTACAGATAAAAGTCAATTGATGATTGTATATGAGCAAGTATGCAATGGTTCTCTTGACCATTATCTATCAAGGGGAAATTTCCAGTCATTGACATGGAAGGAAAGAATGAAAATATCAATAGGTACTAGTAGAGGTTTAAAGTATCTACATGAGAATAAGATAGTTCATGGAAGTATAAAAGCAAGTAACATTCTTCTAACACATGACTTTGAACCGCTGATTGGAGATTTCGGATTTGGAAAAGTGAAACTGGAACCAAAGAAGTCCTACAAAGATAAAAGTGGACGAGATTTTGGATATACAGCACCTGAGTATTTGGAGAGTGGGAAATTATCAACTAAGACAGACGTGTACTCCTTTGGAGTGGTTCTTTTAGAACTGATCACCGGTCGGAGAGCAATGGACAAGTTACAAGGAGGCAAAAACCTCGTTGGATGGGCAAAGCCGCTGCTGGGAGGAAAGAAGTATCCACAGTTAGTGGATTCGAAAATCAGTAACACCTATGAAGAAGAGCAACTTCAATGGTTGATCCAAGTAACAGAAAAATGTCTCAAAAAGAATCCCAAGGAAAGATATTCAATGAATATGGTTGTATCTGCATTACAAGGCATAACAGAATCAGATGACTGTTGTGTAATTGAAGATTCTTCTTCTTCTTCTTCAGAAAAATCTTATTTACCAAACGATGAGCCGGCCATGCCCATGACTACTAATTCACATGGTCATATGATGGCTGATCCGGTAAGCTGGGAAGCAGAACTGATTGACAGAAACACATGCAAGGCAGAGACAAACTTCATAACAGCAATTACAACTAATGATACGATTGAACATATCAAGGAAAATCAATACAAAAAAGAAAGCTTCCACATAGAAGAGAATGATATAGAGAAAAAACAAGTAAATAAACAAGAAAAGATAATCCTGGACGAAAAACCAATCCAAGACAGCTATGAAAATGAGGGCTTATTGAATGAAAATCAAGGAGAAACCATTTTGGAGAGTATTTCAAAGTCTTCTGTATGCTCAATCTGCAAAAGTAAACGCCCAAATAATGAGTGGCAAAGGAAATTTACTTATGAAGAAATTGAAGCTGCTACAGAAGGATTTTCAATAAAGTATTCTCTATCTGAAGGTGCATATGGACCCGCCTTCAAAGTTCAGCTGGATAATAAGATGAAAGTAGCTATTAAGAAAATTCAAGTCTCAAGCTTGCAGGAAGAGAAGGTGTTTGTGTCAGAAATTCAGTTGCTCGCAAATACTAGACATGAAAACATGATCACGCTTCTTGGTTCATGTATACGACAAAATCAAATGCTGATCGTATATGAGTACGCATGCAACGGTTCGCTTGACCAGTACTTATCAAGCAAAAGTGGTAGACTATTATTGACTTGGAGAGAAAGGATGAAAATTGCAACAGGGGTATCCAGAGGTCTGAAGTATCTACATGAGAATAACATAATACATGGAAGAGTAAAACCAAGTAACATTCTTCTAAATCATGACTATAAATCATTGCTTGGAGATTTTGTGTTTCCAAAAGAAAGACGGGAATTGAAGAATAGCTGCAAGGATAAAAGTGTTAAAAATTGTGGATACACTGCACCGGAGTGTAAGGAGAGTGGAAAAGTATCGACAAAGGCAGATGTGTACTCTTTTGGTGTAATTCTTTTAGAATTGATCACAGGATGTATGGTTTCAGATAAGATACAAGGACGGAAATGTCTTGTTGAATGGGCAAGGCCACTTCTAGGAGGAAGGGAGTACCTACAATTGATGGATCCTGAAATCAGCAGCTCCTATGATGAAGAGGAACTTGCTTCATTGGTCCTAGTATCAGAAAAGTGCCTCAGAAATAACCCCAAGGAAAGGTTTACAATGAATATGGTTGTCTCGTTAATGCCATCTGTAGTTCATATCAATGACATTAATGCAATTGAAGACTCTTCATCAGAAAAGTCAGATGATGTTTCAGATGTAACAAGCTCAGAAATTCAGGAGGAACTAGGAGAAGAAGAAGGTTTAGTCACAAGTGAAGAAAGAGAAAACAACATAAGATGTAGTAGAAAAAAGAGTGATTGGTACACAACTAGTGGCGGAAATTGCATGGAAACAAAGGAAAAAGAAAGGTGTGAATCTTATGGTGGAGCTAGACACTTTTTCCTAGATGGGGCTCAAGAATATATTGCATGTGAAGAATTATTTAGCTTGTGTAATTCGATTTGA 4890 0.3767 MTIETKHVVVIQDASKLIFKVFSWVINGLSLKAGDMVTLFAILHEVYNPMGYKTKMDNNGLVGVNQRIIDGELARKKEEYLNHEELAKIAELYDSNEVTFKIQLYAGSSPKDFAIEGAINLKATWVILDRQMKKDEEFFMQKLSCGISRILGKNHIERIRGPIDVAVEIQCNSHETYPESLPESPGEDVSNGPINVEEASQINFRPDKDEGCSTFIPSMDVTDISSNKIINKIGDKQCQQGEEHIEKMAYEDDMGTTLVTNNDQAKDLRMSQDQGKNGSRCSICSICKTRRPNIEWQKEFTYEEVEAATDGFSLKNCLPESGNPFSTFKGKLEGELNIVVKQHEITNIQVREKMISEVQTIVKARHNNVVMLLGSSTKDRFMLIVYEYACNGSLDMYLSRENCRKLAWSERLRVAIGLSRGLKYLHDNNIIHGNIKPSNILLTHDFKPLLGDFDLGKKLEPKKSFNNKSIGNSEYTAPEYQEKGKLSTKTDVYSFGVVILELITGRNATDKISGEKRLVGWAKPLLGGKKYSELVDPIISNTYEEDQLRWLVKVTAQCLKKKPKERLSMNMVVSALQGIADSEQCNITEELTLVTSDSRIGSDIDGSQVTLHGITDRKQCNMTEDIPQVVSNSRDIDLLSPKEEQIERISFDEESWLRIKVENNQFYTIAHESSDILSQIDEHVQSLPKDLDLGNMIINQHMMDQTVVAEMSDFELNLKSNHNENDVPAQKISNNRMIGHDQEDETSLVQMKRGLQPVPISGIIVQKKLQTSFTESSHDGHQEEIILEKSKSSACSICKSKRPKIVRMKDFTCDELVEATKGFSVENSLSESEDGPTFKGLLLESKVKIVVKKHQMTRSQEEKTFKSEVQLFTNVRHKNVVMLLGLCTDKSQLMIVYEQVCNGSLDHYLSRGNFQSLTWKERMKISIGTSRGLKYLHENKIVHGSIKASNILLTHDFEPLIGDFGFGKVKLEPKKSYKDKSGRDFGYTAPEYLESGKLSTKTDVYSFGVVLLELITGRRAMDKLQGGKNLVGWAKPLLGGKKYPQLVDSKISNTYEEEQLQWLIQVTEKCLKKNPKERYSMNMVVSALQGITESDDCCVIEDSSSSSSEKSYLPNDEPAMPMTTNSHGHMMADPVSWEAELIDRNTCKAETNFITAITTNDTIEHIKENQYKKESFHIEENDIEKKQVNKQEKIILDEKPIQDSYENEGLLNENQGETILESISKSSVCSICKSKRPNNEWQRKFTYEEIEAATEGFSIKYSLSEGAYGPAFKVQLDNKMKVAIKKIQVSSLQEEKVFVSEIQLLANTRHENMITLLGSCIRQNQMLIVYEYACNGSLDQYLSSKSGRLLLTWRERMKIATGVSRGLKYLHENNIIHGRVKPSNILLNHDYKSLLGDFVFPKERRELKNSCKDKSVKNCGYTAPECKESGKVSTKADVYSFGVILLELITGCMVSDKIQGRKCLVEWARPLLGGREYLQLMDPEISSSYDEEELASLVLVSEKCLRNNPKERFTMNMVVSLMPSVVHINDINAIEDSSSEKSDDVSDVTSSEIQEELGEEEGLVTSEERENNIRCSRKKSDWYTTSGGNCMETKEKERCESYGGARHFFLDGAQEYIACEELFSLCNSI 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00670 1629 FunFam Proline-rich receptor-like protein kinase PERK8 1219 1332 - -
Vifa2g00670 1629 PANTHER OS01G0253100 PROTEIN 771 1094 - -
Vifa2g00670 1629 SUPERFAMILY Protein kinase-like (PK-like) 296 576 IPR011009 -
Vifa2g00670 1629 Gene3D Phosphorylase Kinase; domain 1 807 898 - -
Vifa2g00670 1629 FunFam Proline-rich receptor-like protein kinase PERK8 785 899 - -
Vifa2g00670 1629 ProSiteProfiles Protein kinase domain profile. 823 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00670 1629 ProSiteProfiles Protein kinase domain profile. 1257 1525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00670 1629 Pfam Protein tyrosine and serine/threonine kinase 333 576 IPR001245 GO:0004672|GO:0006468
Vifa2g00670 1629 Pfam Protein tyrosine and serine/threonine kinase 827 1088 IPR001245 GO:0004672|GO:0006468
Vifa2g00670 1629 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 389 588 - -
Vifa2g00670 1629 Gene3D Phosphorylase Kinase; domain 1 1219 1332 - -
Vifa2g00670 1629 SUPERFAMILY Protein kinase-like (PK-like) 807 1094 IPR011009 -
Vifa2g00670 1629 SUPERFAMILY Protein kinase-like (PK-like) 1240 1520 IPR011009 -
Vifa2g00670 1629 Pfam Protein kinase domain 1262 1519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00670 1629 MobiDBLite consensus disorder prediction 1536 1569 - -
Vifa2g00670 1629 ProSiteProfiles Protein kinase domain profile. 302 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00670 1629 MobiDBLite consensus disorder prediction 1549 1563 - -
Vifa2g00670 1629 Gene3D Phosphorylase Kinase; domain 1 287 388 - -
Vifa2g00670 1629 Gene3D Transferase(Phosphotransferase) domain 1 1334 1548 - -
Vifa2g00670 1629 Gene3D Transferase(Phosphotransferase) domain 1 900 1109 - -
Vifa2g00670 1629 Gene3D Transferase(Phosphotransferase) domain 1 390 599 - -
Vifa2g00670 1629 FunFam Lectin-domain containing receptor kinase A4.3 900 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00670 Vifa-Chr2 158251326 158263213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00670 300 601 Trihelix Transcription Factor Family AT5G38560 37.143 9.94e-52 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa2g00670 Pkinase 6.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00670 - - tpra:123916481 2274.59