Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00667 ATGTCAAGGAGAGCAACATTTTGGTGTCATACATGCCGGCAAGCAATCTTGCTTGCAGGGAGGGATGTACTTTGCCCTTACTGCGACGGAGGATTTGTGCAAGAAATTAACGAGATGCGAGGACTTGTATCCTCGTCACAGTGGGAAGAGTTTCAAGACAATCCTGATATTTTGGATGCTATACATGCTGTTGTAAGTCAAAGAGATTCTATACCAAGAATTGGATTTAGAGATGCTGTTGATATTTACATGAGGCAGAGAATGGGTGGAAGAAACACAAACTTTGATGTAAGAAGAAGATCTGTTCCTGAACATACTTGGGATGTCTTAACTTCATCAGGTCGTTATTTAGTATTTCATGATCAAGCACCTAACTCGAGGGGCGATCCTAGGCATGTTGGTTTTGGTGGCTACTTTATGGATCCTGGACTCGATGAACTTATTGAACAAATCAATACAACCGGACGCGGTGGTCCAGCCCCCGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAAATAACTCAAGCACATCTTCAGTCTGATTCACATTGTTCAGTTTGTATAGAAAGGTTTGAACTCGGGTCTAAGGCAAGGGAAATGCCATGTAAACATATTTACCACTCGGATTGCATTGTTCCTTGGTTAGTTCAGCATAATTCGTGTCCTGTTTGCCGTGATGAGCTGCCACCTCATGGACATCGTAGTCGAAATTGGGGAAGAAGAGTTGGCAGTAGCACGGGTCGTGGAAGGAGAAATCCACTTTCATTTTTGTGGCCATTTCGTTCTTCCAGTTCAAATCCTAGTCATTGA 816 0.4314 MSRRATFWCHTCRQAILLAGRDVLCPYCDGGFVQEINEMRGLVSSSQWEEFQDNPDILDAIHAVVSQRDSIPRIGFRDAVDIYMRQRMGGRNTNFDVRRRSVPEHTWDVLTSSGRYLVFHDQAPNSRGDPRHVGFGGYFMDPGLDELIEQINTTGRGGPAPASRSSIEAMPTIKITQAHLQSDSHCSVCIERFELGSKAREMPCKHIYHSDCIVPWLVQHNSCPVCRDELPPHGHRSRNWGRRVGSSTGRGRRNPLSFLWPFRSSSSNPSH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00667 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Vifa2g00667 271 SMART ring_2 186 226 IPR001841 -
Vifa2g00667 271 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vifa2g00667 271 Pfam Ring finger domain 185 227 IPR001841 -
Vifa2g00667 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 231 - -
Vifa2g00667 271 SUPERFAMILY RING/U-box 166 233 - -
Vifa2g00667 271 CDD RING-H2_RNF126-like 186 227 - -
Vifa2g00667 271 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vifa2g00667 271 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00667 Vifa-Chr2 157169268 157170083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00667 130 231 C3H Transcription Factor Family AT5G01980 41.905 9.13e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00667 K11982 - cam:101496968 429.869