Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00659 ATGATGGGGAGACCACCTTGCTGTGACAAAATTGGTGTTAAGAAAGGACCTTGGACACCAGAAGAGGATATAGTTTTGGTATCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAATAGTACAGGTTTGATGAGATGTAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTAGACCAGGAATCAAACGAGGTAATTTCAATGATCATGAAGAAAAAATGATAATCCACCTGCAAGCACTTTTGGGAAACAGATGGGCTGCCATAGCTTCCTATCTTCCACAGAGGACAGACAATGACATAAAAAACTACTGGAACACACATTTGAAGAAAAAGCTAAAGAACATCCAAACAGGGAATAACAATAACAACAATGAAGAAGAAGGAAACTCTTCTTCTCCACAGGTAAAAGGCCAATGGGAAAGAAGGCTTCAAACAGATATCCATACAGCAAAACAAGCTTTATGTGATGCACTTTCCCTTGACAAATCATTATCAACACCTCTTTTACCCGAAACCCAAACCACAACACGGTTCCCTTATGCATCCAACACTGAAAACATAGCTAAATTGCTTGAAAAATGGATGAAAAAACCTACAGGATCAAGTTCTAGTGAAGGTGCAAAGAGTAGTGTTGCATCAGCATGCATGCAAAAAGATCAACCAGGTTTTGACTCTTTGTTGAGCTTTAATTCTGATTGTTCTCAATCTGTGGTTGAAGAAAGTAACAACTTGACTATGGATTCTTGCTTCTATCAATATGAAATTAAGCCAAATCAAGAAACTCAAGTTCCTCTCATGTTCTTGGAGAAGTGGCTTTTTGATGATGGAGCTGCTCAGTGCAATGAAGATATAATGAACATGTCTTTGCAGGAAAATACATCAGGGCTGTTTTAG 909 0.3839 MMGRPPCCDKIGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPNSTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKNIQTGNNNNNNEEEGNSSSPQVKGQWERRLQTDIHTAKQALCDALSLDKSLSTPLLPETQTTTRFPYASNTENIAKLLEKWMKKPTGSSSSEGAKSSVASACMQKDQPGFDSLLSFNSDCSQSVVEESNNLTMDSCFYQYEIKPNQETQVPLMFLEKWLFDDGAAQCNEDIMNMSLQENTSGLF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00659 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa2g00659 302 MobiDBLite consensus disorder prediction 120 145 - -
Vifa2g00659 302 FunFam Transcription factor MYB30 69 127 - -
Vifa2g00659 302 Gene3D - 70 162 - -
Vifa2g00659 302 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vifa2g00659 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Vifa2g00659 302 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vifa2g00659 302 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vifa2g00659 302 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vifa2g00659 302 Gene3D - 14 67 - -
Vifa2g00659 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 233 - -
Vifa2g00659 302 CDD SANT 70 113 IPR001005 -
Vifa2g00659 302 SMART sant 67 115 IPR001005 -
Vifa2g00659 302 SMART sant 14 64 IPR001005 -
Vifa2g00659 302 CDD SANT 17 62 IPR001005 -
Vifa2g00659 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vifa2g00659 302 FunFam MYB-related transcription factor 14 67 - -
Vifa2g00659 302 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00659 Vifa-Chr2 153921942 153923875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00659 2 302 MYB Transcription Factor Family AT5G62470 52.473 1.46e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g00659 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00659 K09422 - gmx:100794319 407.912