Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00658 ATGAAGAAGCGACAAGTTGTGTTGAAAAGAGAAGAGGCTAAAACTTCATCTTCAATTACAAGAAATATTCGATATGGAGAGTGCCAGAAGAATCATGCAGCAATTATTGGAGGGTATGCCGTGGATGGTTGCAGGGAGTTCATGGCTAGCACAGGAGAAGAAGGAACAGGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGAACTTTCATAGAAGGGAAGTGCAAACTGAAGTTGTTTATCCATCTAATCTTGTACAGATCCGTGTAAGATTGGATGAATTCATGCGAAGATCATTTACAAGAAAGGTTAAAATATACAGATAG 330 0.403 MKKRQVVLKREEAKTSSSITRNIRYGECQKNHAAIIGGYAVDGCREFMASTGEEGTGGALTCAACGCHRNFHRREVQTEVVYPSNLVQIRVRLDEFMRRSFTRKVKIYR 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00658 109 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 79 - -
Vifa2g00658 109 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 76 IPR006456 -
Vifa2g00658 109 Pfam ZF-HD protein dimerisation region 23 76 IPR006456 -
Vifa2g00658 109 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 75 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00658 Vifa-Chr2 153483675 153484092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00658 1 85 Zinc finger-homeobox gene family AT3G28917 65.591 9.98e-38 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa2g00658 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00658 - - pcin:129319329 135.576