Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00651 ATGGGAAGTTCTTGTACAAAACCAGTTGCTCATGTTTCTTCATCTAATATTTCTGGAAGTAAGAAGCCTCAAAGCAGGACAAATCAGTATTCAAATTCATCTAAACAAAAAGCTTCTAGTGAAGAAAATGTTGATCCATCAATCTCCAGTAAACTTAAGTCATTCAGCTTGATTGATCTGAAGGAGGCTACTAAGAATTTCCGGCGAGAGAATTTAATCGGGGAGGGAGGTTTTGGGCGTATCTTCAAGGGATGGATTGATGAAAACACGTATATTCCAACAAAACCAGGGAGTGGAATTGTAGTGGCCATTAAGAATCTCAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTGGCAGAAGTTAATTATCTAGGGCAGCTTCACCATGAAAATCTTGTGAAACTCATTGGTTATTGCTTGCAAGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGTCTGGAAAATCATTTATTCAGAAAAAATGTTCAACCTATTGCATGGGCAACGCGTGTCAACATTTCTGTTGGTGTTGCAAAAGGATTAGCATTTTTACATTCCTTGAATGCAAATGTTATCTTTCGTGATTTAAAGGCGTCCAATATCCTACTTGATTCAGATTTCAATGCAAAGCTTTCGGATTTCGGGTTGGCAAGAGATGGTCCTACAGGAGATAATACTCATGTTTCAACTAGAGTTATTGGAACTCAAGGTTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTGTACAGCTTTGGCGTTGTTTTGTTAGAGTTACTAACAGGAAAGCGTGCTGTAGAAGACGCAAGACCTGGACTTTCTGAAGAAACTCTGGTGGATTGGGCAATGCCTTTCTTGAGTGATACCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAGTACTCAAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCACTACAATGCTTAAATTCAGATCCTAAATTTAGACCACCTATGGTAGATGTTGTTGCAACATTGGAAGGACTTCAATCATCAAAATATGGAAATCACACTCCAGCAACCAAACACTCTTCTCATTCCCTAAGCTAA 1116 0.3961 MGSSCTKPVAHVSSSNISGSKKPQSRTNQYSNSSKQKASSEENVDPSISSKLKSFSLIDLKEATKNFRRENLIGEGGFGRIFKGWIDENTYIPTKPGSGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIAWATRVNISVGVAKGLAFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRAVEDARPGLSEETLVDWAMPFLSDTRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNSDPKFRPPMVDVVATLEGLQSSKYGNHTPATKHSSHSLS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00651 371 CDD STKc_IRAK 73 351 - -
Vifa2g00651 371 SMART serkin_6 67 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00651 371 Pfam Protein tyrosine and serine/threonine kinase 70 348 IPR001245 GO:0004672|GO:0006468
Vifa2g00651 371 SUPERFAMILY Protein kinase-like (PK-like) 41 355 IPR011009 -
Vifa2g00651 371 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 153 361 - -
Vifa2g00651 371 Gene3D Transferase(Phosphotransferase) domain 1 153 368 - -
Vifa2g00651 371 ProSitePatterns Protein kinases ATP-binding region signature. 73 105 IPR017441 GO:0005524
Vifa2g00651 371 Gene3D Phosphorylase Kinase; domain 1 40 152 - -
Vifa2g00651 371 ProSiteProfiles Protein kinase domain profile. 67 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00651 371 PANTHER OS01G0588500 PROTEIN-RELATED 31 352 - -
Vifa2g00651 371 FunFam Serine/threonine-protein kinase BIK1 31 152 - -
Vifa2g00651 371 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00651 Vifa-Chr2 151658576 151660152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00651 17 358 Glycoside Hydrolase AT3G07070 46.087 2.03e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa2g00651 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00651 - - gmx:100800654 590.112