Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00650 ATGGCAATGGCAGCCCCGGGGCAACTGAACGTGATCGAATCGCCTTCGCGGGGATCCCGAAGCGTTGATTGCTTTGAAAAATTGGAACAAATTGGTGAAGGAACTTATGGTCAGGTTTACATGGCTCGAGAGATCGAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGAATGGACAATGAAAGAGAAGGGTTTCCAATAACTGCTATACGGGAAATCAAAATTCTAAAGAAACTACATCATGAAAATGTTATCAAATTGAAGGAAATTGTCACATCTCCAGGTCCTGAGAAAGATGATCAAGGAAGGCCAGATGGGAACAAATACAAAGGTGGCATATATATGGTCTTCGAATATATGGACCATGATTTAACAGGTCTTGCAGACCGACCCGGCATGAGGTTTACTGTCCCCCAGATCAAGTGTTACATGAGGCAGCTCTTGACCGGACTTCATTATTGTCATGTCAATCAAGTGCTTCACCGTGATATCAAAGGATCAAATCTTCTCATAGATAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCACGCTCATTTTCGAATGAGCATAATGCAAACCTTACAAATCGAGTCATCACTTTATGGTACAGACCCCCCGAGTTACTATTGGGGACTACAAGGTATGGGCCAGCTGTAGACATGTGGTCCGTTGGGTGCATTTTCGCTGAGCTTCTTCACGGGAAGCCCATCTTTCCTGGAAAAGATGAGCCAGAGCAATTAAATAAGATTTTTGAGCTTTGTGGAGCACCCGATGAGGTGAACTGGCCAGGAGTTCAAAAGACTCCTTGGTACAATCAGTTTAAGCCGACAAGACCGATGAAGAGGCGTCTGAGGGATGTTTTCAGACACTTTGATCGTCATGCATTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCAGCTCAGAGAATTCCTGCGAAGGACGCACTTGATGCTGAGTACTTCTGGACTGATCCTTTACCATGCGATCCCAAGAGTTTACCCAAGTATGAGTCCTCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAACAACGGCAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCACCCACAGCAGCATACCCGCCTTCCCCCGATTCAGCAGGGTGGACAACATGCCCAAATGCGGCAAGGCCCTTCCCACTCTATTCATGGTTCTCAAGCAGCAGTTGCTGCAGGACCTAGTCATCATTATGGTAAGCCTCGAGGTCCCTCTGGTGGTCCAGGAAGATATCCTCCTGGTGGAAACCCTAGTGGGGGATACAATCATCCAAATCGTGGAGGTCAAACTGGGGGTGCTGGTTATGGCAGTGGACCATATCCTCCTCAAGGGCGGGGGGCACCTTATGGGTCTAGTGGTATGCCTGCAGGACCCGGTGGTCCTCGTGGTGGAGGTGGAAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCAAGGTGGTCCTCCATATGGTGGATCGGCTGCTGGTCGTGGGTCAAACATGGGTGGGAATCGCAATCAACAGTATGGTTGGCAGCAGTGA 1557 0.4753 MAMAAPGQLNVIESPSRGSRSVDCFEKLEQIGEGTYGQVYMAREIETGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVQKTPWYNQFKPTRPMKRRLRDVFRHFDRHALELLEKMLTLDPAQRIPAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQGGQHAQMRQGPSHSIHGSQAAVAAGPSHHYGKPRGPSGGPGRYPPGGNPSGGYNHPNRGGQTGGAGYGSGPYPPQGRGAPYGSSGMPAGPGGPRGGGGSGYGVGAPNYPQGGPPYGGSAAGRGSNMGGNRNQQYGWQQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00650 518 MobiDBLite consensus disorder prediction 504 518 - -
Vifa2g00650 518 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Vifa2g00650 518 FunFam Cyclin-dependent kinase C-2 12 121 - -
Vifa2g00650 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vifa2g00650 518 CDD STKc_CDK9_like 25 324 - -
Vifa2g00650 518 FunFam Cyclin-dependent kinase C-2 122 364 - -
Vifa2g00650 518 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00650 518 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Vifa2g00650 518 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vifa2g00650 518 MobiDBLite consensus disorder prediction 335 518 - -
Vifa2g00650 518 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Vifa2g00650 518 MobiDBLite consensus disorder prediction 372 396 - -
Vifa2g00650 518 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00650 518 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vifa2g00650 518 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00650 518 MobiDBLite consensus disorder prediction 337 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00650 Vifa-Chr2 151650316 151654909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00650 1 518 Core Cell Cycle Gene Families AT5G10270 77.863 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa2g00650 Pkinase 2.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00650 K08819 - gmx:100793565 894.419