Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00639 ATGGGGCTTTTGAGAGAGAGGAGTAAACAGAAAGCATTTGTTTATCATCATTTTGCTTCAGATGGTGGCAATATGCAATCCAAAATGGCTCTTGCTTATACCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAATTAGCAGAAGTGGCTGTCAATGGTTTTCTCATTTCCAAAGATTCTCCCGTCATTGAACCTATTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTTAGAAAATCTAAAGGGGAAGAGGATGAGGATTTTCAGATTCTCGAGTATCAGGCACAGAAAGGGAATGCTGCTGCTATGTACAAAGTGGGACTCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTCGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGGAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTGCTAATGAAAAACTGTTGATTAATTTAGGGGAAGGGATTGGTGCAAGTAAACTAGTAACCATGTCAGACATCGAATTGGAGCAAGGTCAACTTGATAATAAGGAAAAGCCCAAAAGGATACCTCTAACGCGTTTGGCCAAGTTGAACAAGCCTGAAGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTGTTGTTTTCATCAGTCATTAGTATGTTTTTTAAACCTCCAGACCAGCAGAGGAAAGAGTCCAGGCTATGGTCACTTCTATATGTAGGTTTGGGTTTCGTTACTCTAGTGGTTTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGAAAAACTTATTGAAAGAGTTCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACAATCCTGCAAATTCAAGTGGTGCAGTAGGTGCAAGGCTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTTTCTCTTTTTTAGCTCTATATTGCACAAATGCTTTCACTTTCTACATAGGATCTATTTTAGTGCAACACGGGAAAGCAACGTTTCAAGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCACAGTCTAGTGCTTTGGCACCAGACGCTAACAAGGCGAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGCAAACTTGATATTGATTCCAGCAGCAAAGAGGGTGTAATGCAAGAAACGGTAGTTGGTAAACCTAAGCTGTCAAAAGCTGTGCAATATTCCTCAGAGATAAGAAAGCTAAAGTTAGAACTAAAGCAAGAACGTGATCAGTTGGCCGATATTCAACTAAATTTTCGTGAGGAACAGGAATCAAACAACTCTTTCCGGGAGGAGCTTAAAATGTTAAAGTTGGAAAGAGAAAAAGTGAGTTCATATTTTTGTAGATATGTTAATTTATATGTCATAGCTGCAACATTACATGATTCCAAACGTAAAAGAGCTAATTGGGATAAAGCAATAGGTGCACATATGAAATGA 1800 0.4022 MGLLRERSKQKAFVYHHFASDGGNMQSKMALAYTYTRQDMFDKSVKLYAELAEVAVNGFLISKDSPVIEPIRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACANEKLLINLGEGIGASKLVTMSDIELEQGQLDNKEKPKRIPLTRLAKLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVISMFFKPPDQQRKESRLWSLLYVGLGFVTLVVLPLQNYFFGIAGEKLIERVRSLTFEKIVHQEIRWFDNPANSSGAVGARLSTDASTVKSLVGFSFLALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKAKDSTASIFEILDSKLDIDSSSKEGVMQETVVGKPKLSKAVQYSSEIRKLKLELKQERDQLADIQLNFREEQESNNSFREELKMLKLEREKVSSYFCRYVNLYVIAATLHDSKRKRANWDKAIGAHMK 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00639 599 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 442 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00639 599 SUPERFAMILY ABC transporter transmembrane region 277 485 IPR036640 GO:0005524|GO:0016020
Vifa2g00639 599 Pfam Sel1 repeat 107 142 IPR006597 -
Vifa2g00639 599 Pfam Sel1 repeat 145 177 IPR006597 -
Vifa2g00639 599 Pfam Sel1 repeat 181 215 IPR006597 -
Vifa2g00639 599 Pfam Sel1 repeat 220 240 IPR006597 -
Vifa2g00639 599 CDD ABC_6TM_Pgp_ABCB1_D2_like 287 489 - -
Vifa2g00639 599 Gene3D Tetratricopeptide repeat domain 180 253 IPR011990 GO:0005515
Vifa2g00639 599 Gene3D Tetratricopeptide repeat domain 71 179 IPR011990 GO:0005515
Vifa2g00639 599 Gene3D ABC transporter type 1, transmembrane domain 254 494 IPR036640 GO:0005524|GO:0016020
Vifa2g00639 599 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 1 250 IPR044623 GO:0030433
Vifa2g00639 599 SMART sel1 180 216 IPR006597 -
Vifa2g00639 599 SMART sel1 107 143 IPR006597 -
Vifa2g00639 599 SMART sel1 217 252 IPR006597 -
Vifa2g00639 599 SMART sel1 144 179 IPR006597 -
Vifa2g00639 599 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 72 183 - -
Vifa2g00639 599 SUPERFAMILY HCP-like 88 260 - -
Vifa2g00639 599 Pfam ABC transporter transmembrane region 298 417 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00639 599 Coils Coil 511 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00639 Vifa-Chr2 144687411 144689990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00639 414 490 Calmodulin-binding Proteins AT2G36910 35.065 5.94e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00639 K14026 - psat:127101456 483.026