Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00622 ATGGCTCTTTTGAAACTCCTCTTTGTTGGTTTTCTCTCTCTAGCATCATGTGTCTATGCTTCCAACGATGGTTGGATTGATGCTCATGCTACCTTCTATGGAGGAGGTGATGCCTCTGGCACAATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGCTATGGAACCAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAGTGGATTAAGCTGTGGAGCATGTTTTGAGATAAAGTGTGTTAATGATCAAAAATGGTGTCTTCCAAATTCAATTCTTGTCACTGCAACAAATTTTTGTCCTCCAAACAATGCACTCCCAAATAATGCAGGTGGATGGTGTAACCCTCCACTTCACCATTTTGATCTCTCTCAACCTGTTTTCCAACAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTATTACAGAAGGGTTCCCTGCCAAAAGAAAGGAGGTATAAGATTCACAATCAACGGTCATTCGTACTTCAACCTAGTACTAATAACCAACGTTGGAGGTGCTGGTGATGTTACTGCAGTTTCCATCAAAGGTTCAAAAACTAATTGGGAACCAATGTCAAGAAATTGGGGTCAAAATTGGCAAAGCAACTCTAACCTTGATGGACAGTGTCTCTCCTTTAAGGTCACTACTAGCGACGGTCGCACCGTGGTCGCTAATGATGTTGTGCCAGAGGGATGGTCTTTTGGCCAGACCTTCAATGGGATTCAGTTCTAA 744 0.4288 MALLKLLFVGFLSLASCVYASNDGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDQKWCLPNSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYKAGIVPVYYRRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWEPMSRNWGQNWQSNSNLDGQCLSFKVTTSDGRTVVANDVVPEGWSFGQTFNGIQF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00622 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Vifa2g00622 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Vifa2g00622 247 FunFam Expansin 14 151 - -
Vifa2g00622 247 FunFam Expansin 155 247 - -
Vifa2g00622 247 CDD DPBB_EXPA_N 24 150 - -
Vifa2g00622 247 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Vifa2g00622 247 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Vifa2g00622 247 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Vifa2g00622 247 Pfam Lytic transglycolase 60 145 IPR009009 -
Vifa2g00622 247 SMART dpbb_1 60 145 IPR007112 -
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vifa2g00622 247 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Vifa2g00622 247 Gene3D - 153 247 IPR036749 -
Vifa2g00622 247 PANTHER EXPANSIN-A15 10 245 IPR002963 GO:0009664
Vifa2g00622 247 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vifa2g00622 247 SUPERFAMILY Barwin-like endoglucanases 12 173 IPR036908 -
Vifa2g00622 247 Gene3D - 13 151 IPR036908 -
Vifa2g00622 247 SUPERFAMILY PHL pollen allergen 152 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00622 Vifa-Chr2 141330087 141331340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00622 1 247 Expansin Gene Family AT2G03090 76.923 2.31e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00622 - K20628 gmx:100802401 440.269