Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00615 ATGGAAAATGTTTCAGTCATGTGTAAGGTAGAAGATGAGATGAATTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATAAGTCATTATCTTTATAGAAAGGTAACTGACATTAACTTTTCTTCAAGGGCCATTGGAGAGGTTGATTTGAACAAATCTGAGCCTTGGGATTTGCCTTGGAAAGCAAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGAGATAGAAAGTATCCAACAGGTTTGAGGACTAATAGAGCAACTGAAGGTGGATATTGGAAGGCAACTGGAAAAGATAAGGAGATTGACAGAGGAAAATCTCTTATTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAACTAATTGGGTCATGCATGAATATAGACTTGAGGGTAAATTCTCTGTTATCAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGATATTTCAGAAAAGTCTATCAGACAAAAAGACATGTACTCTTTCTTCTGGGGTAATGAGGTTAGAATCTCTTGGAAATGAAATGAGTTCTTCTATTCTTCCACCTTATTCCATTAACAAAACCAAACCACCTTACGTGTCCTGCTTCTCCAATCTAATTGAAACAAACCAAGTTGAAACCTTTGATTCCTTTACCAACACCCCTTTTGAGCTTCCTTCAAATCATACAATTCATCTTCCAAAAAACTCACTTTCCATTGGCTCATTTTACTCTACTCATGAACTTCAAGCTACACCAAATATTCCATCACATATGGATCTATCTCCCTTGTGGAACTATTAA 828 0.372 MENVSVMCKVEDEMNLPPGFRFHPTDEELISHYLYRKVTDINFSSRAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEGGYWKATGKDKEIDRGKSLIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVINLPKTAKNEWVICRIFQKSLSDKKTCTLSSGVMRLESLGNEMSSSILPPYSINKTKPPYVSCFSNLIETNQVETFDSFTNTPFELPSNHTIHLPKNSLSIGSFYSTHELQATPNIPSHMDLSPLWNY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00615 275 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vifa2g00615 275 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Vifa2g00615 275 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Vifa2g00615 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 218 - -
Vifa2g00615 275 FunFam NAC domain-containing protein 100-like 25 170 - -
Vifa2g00615 275 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00615 Vifa-Chr2 137526556 137528379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00615 14 217 NAC Transcription Factor Family AT5G07680 70.616 1.47e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa2g00615 NAM 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00615 - - gmx:100170719 391.349