Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00612 ATGGAGTCTGTCATTGGTCCAAGATTCATAGCACAGGATATTTCATTTTGGAATACTGCTGGTCCAGAAAATTGTCAAGCATTGGCACTCAAATCTGACTCCGACTTCTCTGTCTTTTATAGAGTTGAGGTTTCTGGTTATCAAGATAGTTTATGTGTCAACACTAATCGTCAGTTTTATAGAGAGTGTAAAATTAGTGGCTCGGTTGACTTTATTTTTGGATATGCCACTGTAGTGTTTCAAAATTGTACAATATTAATTAAAAAAGGGAAACCAGGACAAGAATACACAATCACGGCTCAAGGAGGATACCTAGGAATACCAAGTGGATTTTCGTTTCAATTTTGCAATATATTAGCAGATTATGATCTTTTACCCTTAATTAATTCAACCTCAGCATTTCTTGGTAGACCATGGAAGCAAAATTCTACAACAATTTTTATGCAATCAAATATAAGTAATGTGTTGAGTCCGAAAGGTTGGTTAGAGTGGGAAGGTGCCCCCGAATATTTAGATACATTATTTTATGCAGAATATATGAATTATGGGCCAGGAGCTAACACAACAAATCGAGTAAAATGGTCAGGCTATCATTTATTGAATTCTTCTCAGGCTAATAACTTCACGGTGGCCAACTTTATTTCGGGAGATCAATGGCTACCTTCAACAGGAATACCGTTTACTAGTGGATTAGAGAATCAAATTATCACTTAA 714 0.3585 MESVIGPRFIAQDISFWNTAGPENCQALALKSDSDFSVFYRVEVSGYQDSLCVNTNRQFYRECKISGSVDFIFGYATVVFQNCTILIKKGKPGQEYTITAQGGYLGIPSGFSFQFCNILADYDLLPLINSTSAFLGRPWKQNSTTIFMQSNISNVLSPKGWLEWEGAPEYLDTLFYAEYMNYGPGANTTNRVKWSGYHLLNSSQANNFTVANFISGDQWLPSTGIPFTSGLENQIIT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00612 237 ProSitePatterns Pectinesterase signature 2. 65 74 IPR033131 -
Vifa2g00612 237 SUPERFAMILY Pectin lyase-like 4 230 IPR011050 -
Vifa2g00612 237 PANTHER PECTINESTERASE 4 221 - -
Vifa2g00612 237 Gene3D - 2 233 IPR012334 -
Vifa2g00612 237 Pfam Pectinesterase 4 217 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00612 Vifa-Chr2 135495330 135499478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00612 3 231 Carbohydrate Esterase AT4G33220 61.039 1.15e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00612 K01051 - gmx:100798620 302.753